Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03753 and CCNA_03754 overlap by 20 nucleotides CCNA_03754 and CCNA_03755 are separated by 119 nucleotides CCNA_03755 and CCNA_03756 are separated by 62 nucleotides
CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709
_03753
CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376
_03754
CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947
_03755
CCNA_03756: CCNA_03756 - cation efflux family transporter, at 3,926,010 to 3,926,939
_03756
Position (kb)
3924
3925
3926 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3923.517 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.520 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.530 kb on - strand, within CCNA_03753 at 3923.535 kb on - strand, within CCNA_03753 at 3923.557 kb on - strand, within CCNA_03753 at 3923.584 kb on - strand, within CCNA_03753 at 3923.590 kb on - strand, within CCNA_03753 at 3923.597 kb on - strand at 3923.602 kb on + strand at 3923.622 kb on - strand at 3923.681 kb on + strand at 3924.400 kb on - strand at 3924.530 kb on + strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.537 kb on - strand at 3924.608 kb on + strand at 3924.676 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.765 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.902 kb on - strand, within CCNA_03755 at 3925.203 kb on - strand, within CCNA_03755 at 3925.210 kb on + strand, within CCNA_03755 at 3925.359 kb on + strand, within CCNA_03755 at 3925.362 kb on - strand, within CCNA_03755 at 3925.375 kb on - strand, within CCNA_03755 at 3925.432 kb on - strand, within CCNA_03755 at 3925.480 kb on - strand, within CCNA_03755 at 3925.637 kb on + strand, within CCNA_03755 at 3925.950 kb on - strand at 3925.950 kb on - strand at 3925.993 kb on + strand at 3926.017 kb on + strand at 3926.025 kb on - strand at 3926.026 kb on + strand at 3926.031 kb on + strand at 3926.034 kb on - strand at 3926.201 kb on + strand, within CCNA_03756 at 3926.208 kb on - strand, within CCNA_03756 at 3926.211 kb on - strand, within CCNA_03756 at 3926.230 kb on - strand, within CCNA_03756 at 3926.259 kb on - strand, within CCNA_03756 at 3926.264 kb on - strand, within CCNA_03756 at 3926.321 kb on - strand, within CCNA_03756 at 3926.321 kb on - strand, within CCNA_03756 at 3926.333 kb on + strand, within CCNA_03756 at 3926.336 kb on - strand, within CCNA_03756 at 3926.339 kb on - strand, within CCNA_03756 at 3926.344 kb on + strand, within CCNA_03756 at 3926.384 kb on + strand, within CCNA_03756 at 3926.389 kb on + strand, within CCNA_03756 at 3926.389 kb on + strand, within CCNA_03756 at 3926.397 kb on - strand, within CCNA_03756 at 3926.399 kb on + strand, within CCNA_03756 at 3926.402 kb on - strand, within CCNA_03756 at 3926.402 kb on - strand, within CCNA_03756 at 3926.503 kb on + strand, within CCNA_03756 at 3926.503 kb on + strand, within CCNA_03756 at 3926.510 kb on - strand, within CCNA_03756 at 3926.517 kb on + strand, within CCNA_03756 at 3926.532 kb on - strand, within CCNA_03756 at 3926.534 kb on + strand, within CCNA_03756 at 3926.549 kb on - strand, within CCNA_03756 at 3926.577 kb on + strand, within CCNA_03756 at 3926.590 kb on - strand, within CCNA_03756 at 3926.596 kb on - strand, within CCNA_03756 at 3926.608 kb on + strand, within CCNA_03756 at 3926.621 kb on - strand, within CCNA_03756 at 3926.632 kb on - strand, within CCNA_03756 at 3926.639 kb on + strand, within CCNA_03756 at 3926.642 kb on - strand, within CCNA_03756 at 3926.649 kb on + strand, within CCNA_03756 at 3926.649 kb on + strand, within CCNA_03756 at 3926.655 kb on + strand, within CCNA_03756 at 3926.663 kb on - strand, within CCNA_03756 at 3926.669 kb on + strand, within CCNA_03756 at 3926.672 kb on - strand, within CCNA_03756 at 3926.687 kb on - strand, within CCNA_03756 at 3926.692 kb on + strand, within CCNA_03756 at 3926.692 kb on + strand, within CCNA_03756 at 3926.692 kb on + strand, within CCNA_03756 at 3926.700 kb on - strand, within CCNA_03756 at 3926.710 kb on - strand, within CCNA_03756 at 3926.742 kb on - strand, within CCNA_03756 at 3926.758 kb on + strand, within CCNA_03756 at 3926.778 kb on + strand, within CCNA_03756 at 3926.786 kb on - strand, within CCNA_03756 at 3926.834 kb on - strand, within CCNA_03756 at 3926.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,923,517 + CCNA_03753 0.83 -0.8 3,923,517 + CCNA_03753 0.83 +0.4 3,923,520 - CCNA_03753 0.83 +0.8 3,923,525 - CCNA_03753 0.84 +0.3 3,923,525 - CCNA_03753 0.84 -0.8 3,923,525 - CCNA_03753 0.84 +0.7 3,923,525 - CCNA_03753 0.84 -0.2 3,923,525 - CCNA_03753 0.84 +1.2 3,923,530 - CCNA_03753 0.84 +0.7 3,923,535 - CCNA_03753 0.85 +1.0 3,923,557 - CCNA_03753 0.86 +0.2 3,923,584 - CCNA_03753 0.89 +0.5 3,923,590 - CCNA_03753 0.89 +0.6 3,923,597 - +0.3 3,923,602 + -0.5 3,923,622 - -0.8 3,923,681 + -2.6 3,924,400 - +1.1 3,924,530 + -2.4 3,924,532 - +0.0 3,924,532 - +2.3 3,924,532 - +0.7 3,924,532 - +0.3 3,924,537 - -3.4 3,924,608 + -3.1 3,924,676 - CCNA_03755 0.12 -1.6 3,924,741 - CCNA_03755 0.17 -1.0 3,924,765 - CCNA_03755 0.19 -2.1 3,924,832 - CCNA_03755 0.23 -2.5 3,924,832 - CCNA_03755 0.23 -0.2 3,924,875 - CCNA_03755 0.26 -2.4 3,924,902 - CCNA_03755 0.28 -2.4 3,925,203 - CCNA_03755 0.49 -1.2 3,925,210 + CCNA_03755 0.49 -2.6 3,925,359 + CCNA_03755 0.59 +1.3 3,925,362 - CCNA_03755 0.60 -1.8 3,925,375 - CCNA_03755 0.61 -1.7 3,925,432 - CCNA_03755 0.64 +1.3 3,925,480 - CCNA_03755 0.68 -1.8 3,925,637 + CCNA_03755 0.79 +0.3 3,925,950 - +0.8 3,925,950 - +0.7 3,925,993 + +1.1 3,926,017 + +2.9 3,926,025 - -0.2 3,926,026 + -1.2 3,926,031 + -0.3 3,926,034 - -0.1 3,926,201 + CCNA_03756 0.21 +0.3 3,926,208 - CCNA_03756 0.21 -0.5 3,926,211 - CCNA_03756 0.22 -1.4 3,926,230 - CCNA_03756 0.24 +2.9 3,926,259 - CCNA_03756 0.27 -0.1 3,926,264 - CCNA_03756 0.27 +0.8 3,926,321 - CCNA_03756 0.33 +0.4 3,926,321 - CCNA_03756 0.33 -1.2 3,926,333 + CCNA_03756 0.35 -0.4 3,926,336 - CCNA_03756 0.35 -0.1 3,926,339 - CCNA_03756 0.35 +0.7 3,926,344 + CCNA_03756 0.36 -0.4 3,926,384 + CCNA_03756 0.40 -0.2 3,926,389 + CCNA_03756 0.41 +2.3 3,926,389 + CCNA_03756 0.41 -1.1 3,926,397 - CCNA_03756 0.42 -1.5 3,926,399 + CCNA_03756 0.42 -1.5 3,926,402 - CCNA_03756 0.42 +0.5 3,926,402 - CCNA_03756 0.42 +0.4 3,926,503 + CCNA_03756 0.53 -0.0 3,926,503 + CCNA_03756 0.53 -2.7 3,926,510 - CCNA_03756 0.54 +0.7 3,926,517 + CCNA_03756 0.55 +0.5 3,926,532 - CCNA_03756 0.56 +1.9 3,926,534 + CCNA_03756 0.56 +0.2 3,926,549 - CCNA_03756 0.58 +0.9 3,926,577 + CCNA_03756 0.61 -1.6 3,926,590 - CCNA_03756 0.62 +1.3 3,926,596 - CCNA_03756 0.63 +0.2 3,926,608 + CCNA_03756 0.64 +0.0 3,926,621 - CCNA_03756 0.66 +0.6 3,926,632 - CCNA_03756 0.67 -0.1 3,926,639 + CCNA_03756 0.68 +0.9 3,926,642 - CCNA_03756 0.68 +0.6 3,926,649 + CCNA_03756 0.69 +0.2 3,926,649 + CCNA_03756 0.69 +0.8 3,926,655 + CCNA_03756 0.69 -0.5 3,926,663 - CCNA_03756 0.70 +0.0 3,926,669 + CCNA_03756 0.71 +0.8 3,926,672 - CCNA_03756 0.71 +0.2 3,926,687 - CCNA_03756 0.73 +0.0 3,926,692 + CCNA_03756 0.73 -1.5 3,926,692 + CCNA_03756 0.73 +0.5 3,926,692 + CCNA_03756 0.73 -0.4 3,926,700 - CCNA_03756 0.74 +0.6 3,926,710 - CCNA_03756 0.75 -0.3 3,926,742 - CCNA_03756 0.79 +0.4 3,926,758 + CCNA_03756 0.80 +0.6 3,926,778 + CCNA_03756 0.83 -0.0 3,926,786 - CCNA_03756 0.83 -2.2 3,926,834 - CCNA_03756 0.89 +0.2 3,926,905 - +1.0
Or see this region's nucleotide sequence