Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01836

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01834 and CCNA_01835 overlap by 4 nucleotidesCCNA_01835 and CCNA_01836 are separated by 57 nucleotidesCCNA_01836 and CCNA_01837 are separated by 148 nucleotides CCNA_01834: CCNA_01834 - oxidoreductase, at 1,965,009 to 1,967,531 _01834 CCNA_01835: CCNA_01835 - ABC transporter ATP-binding protein, at 1,967,528 to 1,968,214 _01835 CCNA_01836: CCNA_01836 - acyl-CoA thioesterase I/lysophospholipase, at 1,968,272 to 1,968,904 _01836 CCNA_01837: CCNA_01837 - transposase, IS30 family, at 1,969,053 to 1,970,081 _01837 Position (kb) 1968 1969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1967.299 kb on - strandat 1967.380 kb on + strandat 1967.441 kb on + strandat 1967.449 kb on - strandat 1967.451 kb on + strandat 1967.454 kb on - strandat 1967.511 kb on + strandat 1967.511 kb on + strandat 1967.511 kb on + strandat 1967.511 kb on + strandat 1967.547 kb on + strandat 1967.584 kb on + strandat 1967.587 kb on - strandat 1967.642 kb on + strand, within CCNA_01835at 1967.644 kb on - strand, within CCNA_01835at 1967.673 kb on - strand, within CCNA_01835at 1967.713 kb on - strand, within CCNA_01835at 1967.730 kb on + strand, within CCNA_01835at 1967.735 kb on + strand, within CCNA_01835at 1967.735 kb on + strand, within CCNA_01835at 1967.740 kb on + strand, within CCNA_01835at 1967.742 kb on + strand, within CCNA_01835at 1967.743 kb on - strand, within CCNA_01835at 1967.743 kb on - strand, within CCNA_01835at 1967.743 kb on - strand, within CCNA_01835at 1967.743 kb on - strand, within CCNA_01835at 1967.760 kb on + strand, within CCNA_01835at 1967.768 kb on - strand, within CCNA_01835at 1967.812 kb on + strand, within CCNA_01835at 1967.817 kb on + strand, within CCNA_01835at 1967.879 kb on - strand, within CCNA_01835at 1967.890 kb on - strand, within CCNA_01835at 1967.897 kb on - strand, within CCNA_01835at 1967.924 kb on + strand, within CCNA_01835at 1967.932 kb on - strand, within CCNA_01835at 1967.953 kb on - strand, within CCNA_01835at 1967.978 kb on + strand, within CCNA_01835at 1968.015 kb on - strand, within CCNA_01835at 1968.031 kb on - strand, within CCNA_01835at 1968.102 kb on - strand, within CCNA_01835at 1968.120 kb on - strand, within CCNA_01835at 1968.157 kb on + strandat 1968.161 kb on - strandat 1968.166 kb on - strandat 1968.166 kb on - strandat 1968.242 kb on - strandat 1968.261 kb on - strandat 1968.271 kb on - strandat 1968.274 kb on + strandat 1968.362 kb on + strand, within CCNA_01836at 1968.434 kb on + strand, within CCNA_01836at 1968.436 kb on + strand, within CCNA_01836at 1968.436 kb on + strand, within CCNA_01836at 1968.444 kb on - strand, within CCNA_01836at 1968.444 kb on - strand, within CCNA_01836at 1968.444 kb on - strand, within CCNA_01836at 1968.564 kb on - strandat 1968.613 kb on + strand, within CCNA_01836at 1968.679 kb on - strand, within CCNA_01836at 1968.801 kb on - strand, within CCNA_01836at 1968.855 kb on - strandat 1968.926 kb on - strandat 1968.982 kb on - strandat 1968.982 kb on - strandat 1969.010 kb on + strandat 1969.068 kb on - strandat 1969.068 kb on - strandat 1969.093 kb on - strandat 1969.159 kb on + strand, within CCNA_01837at 1969.208 kb on - strand, within CCNA_01837at 1969.323 kb on + strand, within CCNA_01837at 1969.323 kb on + strand, within CCNA_01837at 1969.323 kb on + strand, within CCNA_01837at 1969.341 kb on + strand, within CCNA_01837at 1969.409 kb on + strand, within CCNA_01837at 1969.417 kb on - strand, within CCNA_01837at 1969.420 kb on + strand, within CCNA_01837at 1969.500 kb on + strand, within CCNA_01837at 1969.509 kb on + strand, within CCNA_01837at 1969.509 kb on + strand, within CCNA_01837at 1969.509 kb on + strand, within CCNA_01837at 1969.517 kb on - strand, within CCNA_01837at 1969.517 kb on - strand, within CCNA_01837at 1969.542 kb on + strand, within CCNA_01837at 1969.552 kb on - strand, within CCNA_01837at 1969.552 kb on - strand, within CCNA_01837at 1969.597 kb on - strand, within CCNA_01837at 1969.656 kb on - strand, within CCNA_01837at 1969.678 kb on + strand, within CCNA_01837at 1969.683 kb on - strand, within CCNA_01837at 1969.700 kb on + strand, within CCNA_01837at 1969.754 kb on - strand, within CCNA_01837at 1969.787 kb on + strand, within CCNA_01837at 1969.787 kb on + strand, within CCNA_01837at 1969.835 kb on + strand, within CCNA_01837at 1969.843 kb on - strand, within CCNA_01837at 1969.843 kb on - strand, within CCNA_01837at 1969.863 kb on - strand, within CCNA_01837at 1969.882 kb on - strand, within CCNA_01837

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,967,299 - +0.7
1,967,380 + -0.9
1,967,441 + -0.5
1,967,449 - +1.2
1,967,451 + +1.0
1,967,454 - +0.2
1,967,511 + -0.5
1,967,511 + -0.5
1,967,511 + -0.2
1,967,511 + -1.4
1,967,547 + -0.3
1,967,584 + -0.0
1,967,587 - +0.4
1,967,642 + CCNA_01835 0.17 +0.2
1,967,644 - CCNA_01835 0.17 +0.8
1,967,673 - CCNA_01835 0.21 +2.1
1,967,713 - CCNA_01835 0.27 +0.0
1,967,730 + CCNA_01835 0.29 -0.2
1,967,735 + CCNA_01835 0.30 +0.0
1,967,735 + CCNA_01835 0.30 -1.3
1,967,740 + CCNA_01835 0.31 +1.0
1,967,742 + CCNA_01835 0.31 +0.6
1,967,743 - CCNA_01835 0.31 +1.0
1,967,743 - CCNA_01835 0.31 -0.5
1,967,743 - CCNA_01835 0.31 +0.5
1,967,743 - CCNA_01835 0.31 +1.5
1,967,760 + CCNA_01835 0.34 -0.2
1,967,768 - CCNA_01835 0.35 +2.7
1,967,812 + CCNA_01835 0.41 -0.0
1,967,817 + CCNA_01835 0.42 -0.2
1,967,879 - CCNA_01835 0.51 +0.5
1,967,890 - CCNA_01835 0.53 +0.1
1,967,897 - CCNA_01835 0.54 +0.2
1,967,924 + CCNA_01835 0.58 +0.8
1,967,932 - CCNA_01835 0.59 +0.6
1,967,953 - CCNA_01835 0.62 +0.2
1,967,978 + CCNA_01835 0.66 -2.7
1,968,015 - CCNA_01835 0.71 -1.6
1,968,031 - CCNA_01835 0.73 +1.5
1,968,102 - CCNA_01835 0.84 +0.4
1,968,120 - CCNA_01835 0.86 +1.8
1,968,157 + -0.5
1,968,161 - +0.5
1,968,166 - -0.2
1,968,166 - +0.3
1,968,242 - -1.6
1,968,261 - -1.8
1,968,271 - +0.2
1,968,274 + +1.4
1,968,362 + CCNA_01836 0.14 +1.4
1,968,434 + CCNA_01836 0.26 +0.9
1,968,436 + CCNA_01836 0.26 +0.5
1,968,436 + CCNA_01836 0.26 -0.9
1,968,444 - CCNA_01836 0.27 -2.4
1,968,444 - CCNA_01836 0.27 -2.8
1,968,444 - CCNA_01836 0.27 -2.2
1,968,564 - -0.2
1,968,613 + CCNA_01836 0.54 +0.5
1,968,679 - CCNA_01836 0.64 -1.4
1,968,801 - CCNA_01836 0.84 -2.0
1,968,855 - -0.5
1,968,926 - +1.1
1,968,982 - -0.6
1,968,982 - -3.1
1,969,010 + +2.2
1,969,068 - +0.2
1,969,068 - -1.7
1,969,093 - +0.0
1,969,159 + CCNA_01837 0.10 +0.1
1,969,208 - CCNA_01837 0.15 -1.2
1,969,323 + CCNA_01837 0.26 -0.4
1,969,323 + CCNA_01837 0.26 +0.0
1,969,323 + CCNA_01837 0.26 -1.7
1,969,341 + CCNA_01837 0.28 -1.0
1,969,409 + CCNA_01837 0.35 +1.7
1,969,417 - CCNA_01837 0.35 -0.3
1,969,420 + CCNA_01837 0.36 -1.7
1,969,500 + CCNA_01837 0.43 -1.0
1,969,509 + CCNA_01837 0.44 +2.3
1,969,509 + CCNA_01837 0.44 -0.6
1,969,509 + CCNA_01837 0.44 +1.2
1,969,517 - CCNA_01837 0.45 +1.8
1,969,517 - CCNA_01837 0.45 -2.5
1,969,542 + CCNA_01837 0.48 -1.0
1,969,552 - CCNA_01837 0.48 -2.2
1,969,552 - CCNA_01837 0.48 -1.0
1,969,597 - CCNA_01837 0.53 -0.6
1,969,656 - CCNA_01837 0.59 -2.6
1,969,678 + CCNA_01837 0.61 +0.8
1,969,683 - CCNA_01837 0.61 +0.9
1,969,700 + CCNA_01837 0.63 -1.0
1,969,754 - CCNA_01837 0.68 +0.2
1,969,787 + CCNA_01837 0.71 -1.6
1,969,787 + CCNA_01837 0.71 -1.0
1,969,835 + CCNA_01837 0.76 -0.9
1,969,843 - CCNA_01837 0.77 -0.3
1,969,843 - CCNA_01837 0.77 -0.8
1,969,863 - CCNA_01837 0.79 +1.8
1,969,882 - CCNA_01837 0.81 -0.8

Or see this region's nucleotide sequence