Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00272 and CCNA_00273 are separated by 8 nucleotides CCNA_00273 and CCNA_00274 are separated by 340 nucleotides CCNA_00274 and CCNA_00275 are separated by 83 nucleotides
CCNA_00272: CCNA_00272 - RmuC family protein, at 285,476 to 286,765
_00272
CCNA_00273: CCNA_00273 - peptide deformylase, at 286,774 to 287,295
_00273
CCNA_00274: CCNA_00274 - hypothetical protein, at 287,636 to 287,998
_00274
CCNA_00275: CCNA_00275 - transposase, DDE family, at 288,082 to 289,527
_00275
Position (kb) 287
288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 286.641 kb on - strand at 286.705 kb on - strand at 286.706 kb on + strand at 286.716 kb on + strand at 286.734 kb on + strand at 286.770 kb on + strand at 286.778 kb on - strand at 287.268 kb on + strand at 287.290 kb on + strand at 287.290 kb on + strand at 287.290 kb on + strand at 287.290 kb on + strand at 287.290 kb on + strand at 287.290 kb on + strand at 287.290 kb on + strand at 287.298 kb on - strand at 287.298 kb on - strand at 287.299 kb on - strand at 287.355 kb on + strand at 287.363 kb on - strand at 287.381 kb on + strand at 287.381 kb on + strand at 287.389 kb on - strand at 287.416 kb on - strand at 287.441 kb on - strand at 287.474 kb on - strand at 287.516 kb on + strand at 287.526 kb on + strand at 287.526 kb on + strand at 287.531 kb on + strand at 287.531 kb on + strand at 287.536 kb on + strand at 287.536 kb on + strand at 287.536 kb on + strand at 287.536 kb on + strand at 287.536 kb on + strand at 287.539 kb on - strand at 287.544 kb on - strand at 287.544 kb on - strand at 287.544 kb on - strand at 287.544 kb on - strand at 287.544 kb on - strand at 287.544 kb on - strand at 287.544 kb on - strand at 287.586 kb on - strand at 287.631 kb on + strand at 287.631 kb on + strand at 287.666 kb on + strand at 287.691 kb on - strand, within CCNA_00274 at 287.738 kb on + strand, within CCNA_00274 at 287.748 kb on + strand, within CCNA_00274 at 287.791 kb on + strand, within CCNA_00274 at 287.808 kb on - strand, within CCNA_00274 at 287.882 kb on + strand, within CCNA_00274 at 287.902 kb on + strand, within CCNA_00274 at 287.910 kb on - strand, within CCNA_00274 at 287.987 kb on + strand at 287.987 kb on + strand at 287.990 kb on - strand at 288.007 kb on - strand at 288.017 kb on - strand at 288.027 kb on - strand at 288.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 286,641 - -1.3 286,705 - -2.5 286,706 + +1.0 286,716 + +0.1 286,734 + -0.5 286,770 + +0.1 286,778 - -1.0 287,268 + +1.4 287,290 + +0.4 287,290 + +1.2 287,290 + +1.4 287,290 + +1.5 287,290 + +2.0 287,290 + +1.0 287,290 + +1.3 287,298 - -0.7 287,298 - +0.7 287,299 - -0.2 287,355 + +1.3 287,363 - -0.9 287,381 + +0.9 287,381 + +1.4 287,389 - -1.0 287,416 - +0.2 287,441 - +0.1 287,474 - -1.0 287,516 + -0.7 287,526 + -0.2 287,526 + +1.2 287,531 + +0.5 287,531 + -1.7 287,536 + -1.8 287,536 + +0.9 287,536 + +3.0 287,536 + +1.1 287,536 + +1.7 287,539 - +0.9 287,544 - +1.0 287,544 - +0.2 287,544 - -1.4 287,544 - +0.9 287,544 - +1.2 287,544 - +0.8 287,544 - +0.4 287,586 - +1.0 287,631 + +0.3 287,631 + -0.1 287,666 + -1.8 287,691 - CCNA_00274 0.15 -0.4 287,738 + CCNA_00274 0.28 -1.1 287,748 + CCNA_00274 0.31 -1.8 287,791 + CCNA_00274 0.43 -0.2 287,808 - CCNA_00274 0.47 -2.1 287,882 + CCNA_00274 0.68 -0.7 287,902 + CCNA_00274 0.73 -1.9 287,910 - CCNA_00274 0.75 -2.7 287,987 + -2.3 287,987 + -0.0 287,990 - -1.0 288,007 - -1.6 288,017 - +0.4 288,027 - +1.0 288,027 - +0.1
Or see this region's nucleotide sequence