Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20175

Experiment: R2A with Chloramphenicol 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.005 mg/ml
4,986,551	+		CA265_RS20165	0.80	-0.6
4,986,641	-		CA265_RS20165	0.85	-0.0
4,986,662	+		CA265_RS20165	0.86	-0.3
4,986,961	+				-0.0
4,987,060	+		CA265_RS20170	0.22	-1.5
4,987,114	+		CA265_RS20170	0.31	-0.9
4,987,115	-		CA265_RS20170	0.31	+1.0
4,987,115	-		CA265_RS20170	0.31	-0.6
4,987,133	-		CA265_RS20170	0.34	+0.4
4,987,207	-		CA265_RS20170	0.46	+0.6
4,987,233	+		CA265_RS20170	0.50	-1.0
4,987,234	-		CA265_RS20170	0.50	-0.7
4,987,263	-		CA265_RS20170	0.55	-1.3
4,987,263	-		CA265_RS20170	0.55	+0.8
4,987,307	+		CA265_RS20170	0.62	+1.0
4,987,474	-		CA265_RS20170	0.89	+0.4
4,987,560	+				+1.1
4,987,561	-				-0.5
4,987,593	-				+0.1
4,987,611	-		CA265_RS20175	0.12	-0.7
4,987,670	+		CA265_RS20175	0.21	+0.5
4,987,728	+		CA265_RS20175	0.30	-1.4
4,987,768	+		CA265_RS20175	0.36	+0.2
4,987,787	+		CA265_RS20175	0.39	-0.9
4,987,848	+		CA265_RS20175	0.49	+0.5
4,987,900	+		CA265_RS20175	0.57	-1.4
4,987,901	-		CA265_RS20175	0.57	+0.6
4,987,958	+		CA265_RS20175	0.66	-0.0
4,987,995	-		CA265_RS20175	0.72	+1.4
4,988,076	+		CA265_RS20175	0.84	-1.1
4,988,080	+		CA265_RS20175	0.85	-1.2
4,988,081	-		CA265_RS20175	0.85	-2.0
4,988,133	-				-1.3
4,988,185	+				+1.3
4,988,186	-				+0.9
4,988,186	-				-0.3
4,988,344	+		CA265_RS20180	0.20	+0.7
4,988,345	-		CA265_RS20180	0.21	-1.6
4,988,380	-		CA265_RS20180	0.25	+0.4
4,988,570	+		CA265_RS20180	0.50	-0.7
4,988,571	-		CA265_RS20180	0.50	-1.1
4,988,593	-		CA265_RS20180	0.53	+0.1
4,988,613	+		CA265_RS20180	0.55	-0.4
4,988,613	+		CA265_RS20180	0.55	+0.5
4,988,613	+		CA265_RS20180	0.55	-0.9
4,988,613	+		CA265_RS20180	0.55	+0.1
4,988,692	+		CA265_RS20180	0.66	-0.9
4,988,693	-		CA265_RS20180	0.66	+0.7
4,988,737	-		CA265_RS20180	0.71	-1.2
4,988,737	-		CA265_RS20180	0.71	-0.9
4,988,845	+		CA265_RS20180	0.85	+0.1
4,988,893	+				+0.0
4,988,974	-				-1.3
4,989,026	-				+0.6
4,989,045	-				-0.9
4,989,110	+		CA265_RS20185	0.15	+0.7
4,989,122	-		CA265_RS20185	0.16	+2.5
4,989,168	+		CA265_RS20185	0.20	+0.1
4,989,168	+		CA265_RS20185	0.20	+0.1
4,989,169	-		CA265_RS20185	0.20	+0.1
4,989,169	-		CA265_RS20185	0.20	-0.8
4,989,169	-		CA265_RS20185	0.20	+0.5
4,989,169	-		CA265_RS20185	0.20	-0.3