Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07455

Experiment: R2A with Chloramphenicol 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.005 mg/ml
1,882,555	+		CA265_RS07445	0.88	-0.7
1,882,555	+		CA265_RS07445	0.88	+0.1
1,882,593	+				+0.7
1,882,664	-				-0.8
1,882,708	-				-0.3
1,882,733	+				+0.9
1,882,734	-				-0.2
1,882,744	-				-0.1
1,882,771	+				-0.0
1,882,776	-				-0.5
1,882,785	-				+0.3
1,882,843	-		CA265_RS07450	0.13	-4.6
1,882,952	-		CA265_RS07450	0.27	-4.2
1,882,988	+		CA265_RS07450	0.31	-4.8
1,882,989	-		CA265_RS07450	0.31	-3.4
1,883,011	+		CA265_RS07450	0.34	-0.5
1,883,077	+		CA265_RS07450	0.42	-3.0
1,883,091	-		CA265_RS07450	0.44	-4.9
1,883,207	+		CA265_RS07450	0.59	-1.9
1,883,207	+		CA265_RS07450	0.59	-4.7
1,883,208	-		CA265_RS07450	0.59	-3.8
1,883,296	+		CA265_RS07450	0.70	-2.2
1,883,358	-		CA265_RS07450	0.78	-2.6
1,883,425	+		CA265_RS07450	0.87	-2.8
1,883,425	+		CA265_RS07450	0.87	-5.7
1,883,425	+		CA265_RS07450	0.87	-2.0
1,883,425	+		CA265_RS07450	0.87	-3.9
1,883,426	-		CA265_RS07450	0.87	-5.4
1,883,426	-		CA265_RS07450	0.87	-4.3
1,883,456	-				-6.5
1,883,530	+				-1.8
1,883,531	-				-1.6
1,883,586	+		CA265_RS07455	0.29	-1.6
1,883,588	+		CA265_RS07455	0.30	-1.0
1,883,589	-		CA265_RS07455	0.30	-0.9
1,883,735	-				-0.7
1,883,742	+				-0.5
1,883,742	+				-1.2
1,883,743	-				-0.2
1,883,747	-				-0.5
1,883,747	-				+0.4
1,883,775	-				+0.0
1,883,800	+				-1.7
1,883,802	+				-1.2
1,883,802	+				-1.4
1,883,848	+		CA265_RS07460	0.12	-1.6
1,883,853	+		CA265_RS07460	0.13	-2.1
1,883,983	-		CA265_RS07460	0.34	+0.3
1,883,994	+		CA265_RS07460	0.36	-2.3
1,883,995	-		CA265_RS07460	0.36	+2.7
1,883,998	+		CA265_RS07460	0.37	-1.0
1,884,049	-		CA265_RS07460	0.45	-1.3
1,884,052	-		CA265_RS07460	0.45	-0.1
1,884,052	-		CA265_RS07460	0.45	+0.0
1,884,075	+		CA265_RS07460	0.49	-2.0
1,884,098	-		CA265_RS07460	0.53	-1.0
1,884,106	-		CA265_RS07460	0.54	+0.4
1,884,130	-		CA265_RS07460	0.58	-0.2
1,884,169	-		CA265_RS07460	0.64	-1.2
1,884,363	+				-3.0
1,884,364	-				-0.5
1,884,461	-				+1.1
1,884,461	-				+0.4