Experiment: R2A with Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00240 and CA265_RS00245 are separated by 78 nucleotides CA265_RS00245 and CA265_RS00250 are separated by 203 nucleotides CA265_RS00250 and CA265_RS00255 are separated by 158 nucleotides
CA265_RS00240: CA265_RS00240 - histidine kinase, at 57,873 to 59,003
_RS00240
CA265_RS00245: CA265_RS00245 - hypothetical protein, at 59,082 to 59,444
_RS00245
CA265_RS00250: CA265_RS00250 - oxidoreductase, at 59,648 to 60,442
_RS00250
CA265_RS00255: CA265_RS00255 - alpha/beta hydrolase, at 60,601 to 61,422
_RS00255
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 58.660 kb on + strand, within CA265_RS00240 at 58.689 kb on + strand, within CA265_RS00240 at 58.716 kb on + strand, within CA265_RS00240 at 58.716 kb on + strand, within CA265_RS00240 at 58.833 kb on - strand, within CA265_RS00240 at 58.855 kb on + strand, within CA265_RS00240 at 58.913 kb on + strand at 59.010 kb on - strand at 59.020 kb on + strand at 59.020 kb on + strand at 59.126 kb on + strand, within CA265_RS00245 at 59.135 kb on + strand, within CA265_RS00245 at 59.186 kb on + strand, within CA265_RS00245 at 59.187 kb on - strand, within CA265_RS00245 at 59.227 kb on + strand, within CA265_RS00245 at 59.240 kb on - strand, within CA265_RS00245 at 59.240 kb on - strand, within CA265_RS00245 at 59.258 kb on + strand, within CA265_RS00245 at 59.285 kb on - strand, within CA265_RS00245 at 59.337 kb on + strand, within CA265_RS00245 at 59.349 kb on - strand, within CA265_RS00245 at 59.374 kb on + strand, within CA265_RS00245 at 59.443 kb on - strand at 59.443 kb on - strand at 59.468 kb on - strand at 59.468 kb on - strand at 59.480 kb on + strand at 59.520 kb on - strand at 59.594 kb on - strand at 59.655 kb on + strand at 59.656 kb on - strand at 59.656 kb on - strand at 59.669 kb on - strand at 59.681 kb on - strand at 59.692 kb on + strand at 59.748 kb on + strand, within CA265_RS00250 at 59.779 kb on - strand, within CA265_RS00250 at 59.779 kb on - strand, within CA265_RS00250 at 59.912 kb on - strand, within CA265_RS00250 at 60.107 kb on + strand, within CA265_RS00250 at 60.118 kb on + strand, within CA265_RS00250 at 60.119 kb on - strand, within CA265_RS00250 at 60.276 kb on + strand, within CA265_RS00250 at 60.277 kb on - strand, within CA265_RS00250 at 60.292 kb on + strand, within CA265_RS00250 at 60.307 kb on + strand, within CA265_RS00250 at 60.365 kb on + strand at 60.370 kb on - strand at 60.370 kb on - strand at 60.411 kb on + strand at 60.412 kb on - strand at 60.423 kb on + strand at 60.470 kb on - strand at 60.470 kb on - strand at 60.470 kb on - strand at 60.509 kb on + strand at 60.510 kb on - strand at 60.585 kb on - strand at 60.606 kb on + strand at 60.607 kb on - strand at 60.666 kb on + strand at 60.693 kb on - strand, within CA265_RS00255 at 60.743 kb on - strand, within CA265_RS00255 at 60.818 kb on - strand, within CA265_RS00255 at 60.818 kb on - strand, within CA265_RS00255 at 60.869 kb on + strand, within CA265_RS00255 at 60.870 kb on - strand, within CA265_RS00255 at 60.910 kb on + strand, within CA265_RS00255 at 60.911 kb on - strand, within CA265_RS00255 at 60.957 kb on + strand, within CA265_RS00255 at 60.975 kb on - strand at 61.020 kb on - strand, within CA265_RS00255 at 61.032 kb on - strand, within CA265_RS00255 at 61.042 kb on - strand, within CA265_RS00255 at 61.042 kb on - strand, within CA265_RS00255 at 61.097 kb on - strand, within CA265_RS00255 at 61.098 kb on + strand, within CA265_RS00255 at 61.098 kb on + strand, within CA265_RS00255 at 61.099 kb on - strand, within CA265_RS00255 at 61.181 kb on - strand, within CA265_RS00255 at 61.181 kb on - strand, within CA265_RS00255 at 61.191 kb on + strand, within CA265_RS00255 at 61.228 kb on - strand, within CA265_RS00255 at 61.235 kb on + strand, within CA265_RS00255 at 61.235 kb on + strand, within CA265_RS00255 at 61.235 kb on + strand, within CA265_RS00255 at 61.294 kb on - strand, within CA265_RS00255 at 61.389 kb on - strand at 61.389 kb on - strand at 61.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.005 mg/ml remove 58,660 + CA265_RS00240 0.70 -0.2 58,689 + CA265_RS00240 0.72 +1.1 58,716 + CA265_RS00240 0.75 -0.5 58,716 + CA265_RS00240 0.75 +1.6 58,833 - CA265_RS00240 0.85 -1.5 58,855 + CA265_RS00240 0.87 -0.4 58,913 + -0.4 59,010 - +0.6 59,020 + -0.6 59,020 + +0.5 59,126 + CA265_RS00245 0.12 +0.2 59,135 + CA265_RS00245 0.15 +0.9 59,186 + CA265_RS00245 0.29 -0.3 59,187 - CA265_RS00245 0.29 -1.1 59,227 + CA265_RS00245 0.40 -1.4 59,240 - CA265_RS00245 0.44 -1.0 59,240 - CA265_RS00245 0.44 +0.4 59,258 + CA265_RS00245 0.48 -0.1 59,285 - CA265_RS00245 0.56 +0.9 59,337 + CA265_RS00245 0.70 +0.7 59,349 - CA265_RS00245 0.74 +0.9 59,374 + CA265_RS00245 0.80 -0.2 59,443 - -2.0 59,443 - +0.6 59,468 - +0.1 59,468 - +0.5 59,480 + +0.0 59,520 - +0.6 59,594 - -0.4 59,655 + -0.1 59,656 - +0.5 59,656 - -0.4 59,669 - +0.3 59,681 - -0.9 59,692 + -2.5 59,748 + CA265_RS00250 0.13 -0.2 59,779 - CA265_RS00250 0.16 +0.2 59,779 - CA265_RS00250 0.16 +0.0 59,912 - CA265_RS00250 0.33 -0.0 60,107 + CA265_RS00250 0.58 -0.3 60,118 + CA265_RS00250 0.59 -1.4 60,119 - CA265_RS00250 0.59 -0.5 60,276 + CA265_RS00250 0.79 -0.0 60,277 - CA265_RS00250 0.79 -0.6 60,292 + CA265_RS00250 0.81 -0.5 60,307 + CA265_RS00250 0.83 -0.6 60,365 + -0.7 60,370 - -2.1 60,370 - +0.8 60,411 + -0.6 60,412 - +2.9 60,423 + +0.4 60,470 - +0.6 60,470 - -0.6 60,470 - -0.4 60,509 + -0.8 60,510 - -0.0 60,585 - -0.3 60,606 + +0.8 60,607 - -0.5 60,666 + -1.0 60,693 - CA265_RS00255 0.11 +0.4 60,743 - CA265_RS00255 0.17 +0.7 60,818 - CA265_RS00255 0.26 -0.5 60,818 - CA265_RS00255 0.26 +0.0 60,869 + CA265_RS00255 0.33 -1.3 60,870 - CA265_RS00255 0.33 +0.6 60,910 + CA265_RS00255 0.38 -1.5 60,911 - CA265_RS00255 0.38 -0.6 60,957 + CA265_RS00255 0.43 -0.2 60,975 - -0.1 61,020 - CA265_RS00255 0.51 +0.5 61,032 - CA265_RS00255 0.52 -1.1 61,042 - CA265_RS00255 0.54 +0.1 61,042 - CA265_RS00255 0.54 +0.1 61,097 - CA265_RS00255 0.60 -0.4 61,098 + CA265_RS00255 0.60 +0.2 61,098 + CA265_RS00255 0.60 +1.2 61,099 - CA265_RS00255 0.61 -0.0 61,181 - CA265_RS00255 0.71 -0.0 61,181 - CA265_RS00255 0.71 +0.3 61,191 + CA265_RS00255 0.72 +0.9 61,228 - CA265_RS00255 0.76 -0.0 61,235 + CA265_RS00255 0.77 +2.0 61,235 + CA265_RS00255 0.77 +0.3 61,235 + CA265_RS00255 0.77 -0.7 61,294 - CA265_RS00255 0.84 -0.2 61,389 - +0.3 61,389 - +0.8 61,393 - -1.1
Or see this region's nucleotide sequence