Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3611 and Ac3H11_3612 are separated by 10 nucleotides Ac3H11_3612 and Ac3H11_3613 overlap by 4 nucleotides Ac3H11_3613 and Ac3H11_3614 overlap by 4 nucleotides Ac3H11_3614 and Ac3H11_3615 are separated by 30 nucleotides
Ac3H11_3611 - Monooxygenase, flavin-binding family, at 163,462 to 164,796
_3611
Ac3H11_3612 - Na(+) dependent transporter,Sodium Bile acid symporter family, at 164,807 to 165,742
_3612
Ac3H11_3613 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 165,739 to 166,749
_3613
Ac3H11_3614 - Permease of the drug/metabolite transporter (DMT) superfamily, at 166,746 to 167,663
_3614
Ac3H11_3615 - Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1), at 167,694 to 168,323
_3615
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1
2 at 164.756 kb on - strand at 164.826 kb on + strand at 164.826 kb on + strand at 164.827 kb on - strand at 165.036 kb on + strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.525 kb on - strand, within Ac3H11_3612 at 165.901 kb on + strand, within Ac3H11_3613 at 165.902 kb on - strand, within Ac3H11_3613 at 166.024 kb on + strand, within Ac3H11_3613 at 166.189 kb on + strand, within Ac3H11_3613 at 166.953 kb on + strand, within Ac3H11_3614 at 166.953 kb on + strand, within Ac3H11_3614 at 167.277 kb on + strand, within Ac3H11_3614 at 167.278 kb on - strand, within Ac3H11_3614 at 167.419 kb on - strand, within Ac3H11_3614 at 167.440 kb on + strand, within Ac3H11_3614 at 167.448 kb on + strand, within Ac3H11_3614 at 167.542 kb on - strand, within Ac3H11_3614 at 167.661 kb on + strand at 167.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 164,756 - -0.3 164,826 + -1.0 164,826 + +0.8 164,827 - -0.5 165,036 + Ac3H11_3612 0.24 +0.7 165,037 - Ac3H11_3612 0.25 +0.1 165,037 - Ac3H11_3612 0.25 +0.5 165,037 - Ac3H11_3612 0.25 -0.5 165,432 - Ac3H11_3612 0.67 +0.4 165,432 - Ac3H11_3612 0.67 -0.7 165,432 - Ac3H11_3612 0.67 +0.2 165,432 - Ac3H11_3612 0.67 +1.3 165,525 - Ac3H11_3612 0.77 +0.6 165,901 + Ac3H11_3613 0.16 -1.4 165,902 - Ac3H11_3613 0.16 +0.0 166,024 + Ac3H11_3613 0.28 -1.2 166,189 + Ac3H11_3613 0.45 +0.0 166,953 + Ac3H11_3614 0.23 -0.6 166,953 + Ac3H11_3614 0.23 -0.5 167,277 + Ac3H11_3614 0.58 -0.2 167,278 - Ac3H11_3614 0.58 -0.2 167,419 - Ac3H11_3614 0.73 +0.5 167,440 + Ac3H11_3614 0.76 +1.1 167,448 + Ac3H11_3614 0.76 +0.3 167,542 - Ac3H11_3614 0.87 +0.8 167,661 + -0.9 167,720 - +2.5
Or see this region's nucleotide sequence