Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3397

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3396 and Ac3H11_3397 are separated by 44 nucleotidesAc3H11_3397 and Ac3H11_3398 are separated by 54 nucleotides Ac3H11_3396 - ProQ: influences osmotic activation of compatible solute ProP, at 73,466 to 74,437 _3396 Ac3H11_3397 - Conserved domain protein, at 74,482 to 75,096 _3397 Ac3H11_3398 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 75,151 to 76,404 _3398 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.614 kb on + strand, within Ac3H11_3396at 73.615 kb on - strand, within Ac3H11_3396at 73.615 kb on - strand, within Ac3H11_3396at 73.615 kb on - strand, within Ac3H11_3396at 73.615 kb on - strand, within Ac3H11_3396at 73.615 kb on - strand, within Ac3H11_3396at 73.615 kb on - strand, within Ac3H11_3396at 73.751 kb on + strand, within Ac3H11_3396at 73.764 kb on + strand, within Ac3H11_3396at 73.765 kb on - strand, within Ac3H11_3396at 73.765 kb on - strand, within Ac3H11_3396at 73.765 kb on - strand, within Ac3H11_3396at 73.864 kb on - strand, within Ac3H11_3396at 73.966 kb on - strand, within Ac3H11_3396at 74.483 kb on + strandat 74.484 kb on - strandat 74.484 kb on - strandat 74.484 kb on - strandat 74.634 kb on - strand, within Ac3H11_3397at 74.634 kb on - strand, within Ac3H11_3397at 74.634 kb on - strand, within Ac3H11_3397at 74.634 kb on - strand, within Ac3H11_3397at 74.756 kb on + strand, within Ac3H11_3397at 74.794 kb on + strand, within Ac3H11_3397at 74.794 kb on + strand, within Ac3H11_3397at 74.795 kb on - strand, within Ac3H11_3397at 74.941 kb on + strand, within Ac3H11_3397at 74.942 kb on - strand, within Ac3H11_3397at 75.133 kb on - strandat 75.320 kb on + strand, within Ac3H11_3398at 75.347 kb on + strand, within Ac3H11_3398at 75.347 kb on + strand, within Ac3H11_3398at 75.347 kb on + strand, within Ac3H11_3398at 75.347 kb on + strand, within Ac3H11_3398at 75.347 kb on + strand, within Ac3H11_3398at 75.347 kb on + strand, within Ac3H11_3398at 75.348 kb on - strand, within Ac3H11_3398at 75.479 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.605 kb on + strand, within Ac3H11_3398at 75.605 kb on + strand, within Ac3H11_3398at 75.635 kb on + strand, within Ac3H11_3398

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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73,614 + Ac3H11_3396 0.15 +0.4
73,614 + Ac3H11_3396 0.15 -0.7
73,614 + Ac3H11_3396 0.15 -1.7
73,614 + Ac3H11_3396 0.15 -0.8
73,614 + Ac3H11_3396 0.15 -1.0
73,614 + Ac3H11_3396 0.15 -0.7
73,614 + Ac3H11_3396 0.15 -0.9
73,614 + Ac3H11_3396 0.15 -0.4
73,614 + Ac3H11_3396 0.15 +1.0
73,615 - Ac3H11_3396 0.15 -0.3
73,615 - Ac3H11_3396 0.15 +1.2
73,615 - Ac3H11_3396 0.15 +0.6
73,615 - Ac3H11_3396 0.15 -0.3
73,615 - Ac3H11_3396 0.15 -1.5
73,615 - Ac3H11_3396 0.15 -0.9
73,751 + Ac3H11_3396 0.29 +0.1
73,764 + Ac3H11_3396 0.31 +0.5
73,765 - Ac3H11_3396 0.31 +0.5
73,765 - Ac3H11_3396 0.31 +0.1
73,765 - Ac3H11_3396 0.31 -0.2
73,864 - Ac3H11_3396 0.41 -0.5
73,966 - Ac3H11_3396 0.51 -0.8
74,483 + -0.5
74,484 - +0.0
74,484 - -2.3
74,484 - -0.5
74,634 - Ac3H11_3397 0.25 -1.0
74,634 - Ac3H11_3397 0.25 -0.4
74,634 - Ac3H11_3397 0.25 +0.3
74,634 - Ac3H11_3397 0.25 -1.2
74,756 + Ac3H11_3397 0.45 +0.0
74,794 + Ac3H11_3397 0.51 +0.9
74,794 + Ac3H11_3397 0.51 +0.6
74,795 - Ac3H11_3397 0.51 +0.3
74,941 + Ac3H11_3397 0.75 -0.3
74,942 - Ac3H11_3397 0.75 +0.6
75,133 - -0.4
75,320 + Ac3H11_3398 0.13 -0.7
75,347 + Ac3H11_3398 0.16 -0.4
75,347 + Ac3H11_3398 0.16 +0.9
75,347 + Ac3H11_3398 0.16 -1.2
75,347 + Ac3H11_3398 0.16 -1.0
75,347 + Ac3H11_3398 0.16 -0.3
75,347 + Ac3H11_3398 0.16 -1.6
75,348 - Ac3H11_3398 0.16 -1.4
75,479 + Ac3H11_3398 0.26 -0.7
75,485 + Ac3H11_3398 0.27 -1.9
75,485 + Ac3H11_3398 0.27 -0.8
75,485 + Ac3H11_3398 0.27 +0.9
75,485 + Ac3H11_3398 0.27 +0.8
75,485 + Ac3H11_3398 0.27 -2.0
75,485 + Ac3H11_3398 0.27 +0.2
75,485 + Ac3H11_3398 0.27 -1.9
75,485 + Ac3H11_3398 0.27 +0.8
75,485 + Ac3H11_3398 0.27 -1.2
75,485 + Ac3H11_3398 0.27 +0.9
75,486 - Ac3H11_3398 0.27 +0.8
75,486 - Ac3H11_3398 0.27 -0.4
75,486 - Ac3H11_3398 0.27 +0.4
75,486 - Ac3H11_3398 0.27 -0.3
75,486 - Ac3H11_3398 0.27 -0.8
75,486 - Ac3H11_3398 0.27 +0.1
75,486 - Ac3H11_3398 0.27 +0.2
75,486 - Ac3H11_3398 0.27 +0.2
75,486 - Ac3H11_3398 0.27 -0.6
75,486 - Ac3H11_3398 0.27 -0.1
75,486 - Ac3H11_3398 0.27 -1.0
75,486 - Ac3H11_3398 0.27 +0.2
75,486 - Ac3H11_3398 0.27 +0.8
75,605 + Ac3H11_3398 0.36 +0.2
75,605 + Ac3H11_3398 0.36 -0.1
75,635 + Ac3H11_3398 0.39 -1.7

Or see this region's nucleotide sequence