Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3221

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3220 and Ac3H11_3221 are separated by 66 nucleotidesAc3H11_3221 and Ac3H11_3222 overlap by 4 nucleotides Ac3H11_3220 - Nitrate ABC transporter, nitrate-binding protein, at 128,004 to 129,248 _3220 Ac3H11_3221 - Cyanate ABC transporter, permease protein, at 129,315 to 130,289 _3221 Ac3H11_3222 - Nitrate ABC transporter, ATP-binding protein, at 130,286 to 131,125 _3222 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2 3at 128.319 kb on + strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.533 kb on - strand, within Ac3H11_3220at 128.533 kb on - strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 129.006 kb on + strand, within Ac3H11_3220at 129.006 kb on + strand, within Ac3H11_3220at 129.006 kb on + strand, within Ac3H11_3220at 129.007 kb on - strand, within Ac3H11_3220at 129.007 kb on - strand, within Ac3H11_3220at 129.075 kb on + strand, within Ac3H11_3220at 129.076 kb on - strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.114 kb on + strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.115 kb on - strand, within Ac3H11_3220at 129.194 kb on - strandat 129.194 kb on - strandat 129.194 kb on - strandat 129.220 kb on - strandat 129.260 kb on - strandat 129.403 kb on + strandat 129.664 kb on - strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.703 kb on + strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.704 kb on - strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.978 kb on + strand, within Ac3H11_3221at 129.979 kb on - strand, within Ac3H11_3221at 129.979 kb on - strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.056 kb on + strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.057 kb on - strand, within Ac3H11_3221at 130.265 kb on + strandat 130.266 kb on - strandat 130.266 kb on - strandat 130.266 kb on - strandat 130.622 kb on + strand, within Ac3H11_3222at 130.622 kb on + strand, within Ac3H11_3222at 130.622 kb on + strand, within Ac3H11_3222at 130.622 kb on + strand, within Ac3H11_3222at 130.623 kb on - strand, within Ac3H11_3222at 130.623 kb on - strand, within Ac3H11_3222at 130.623 kb on - strand, within Ac3H11_3222at 130.623 kb on - strand, within Ac3H11_3222at 130.623 kb on - strand, within Ac3H11_3222at 130.623 kb on - strand, within Ac3H11_3222at 131.004 kb on + strand, within Ac3H11_3222at 131.004 kb on + strand, within Ac3H11_3222at 131.054 kb on + strandat 131.054 kb on + strandat 131.054 kb on + strandat 131.055 kb on - strandat 131.055 kb on - strandat 131.055 kb on - strandat 131.090 kb on + strandat 131.090 kb on + strandat 131.090 kb on + strandat 131.091 kb on - strandat 131.091 kb on - strandat 131.091 kb on - strandat 131.091 kb on - strandat 131.091 kb on - strandat 131.091 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
128,319 + Ac3H11_3220 0.25 +0.9
128,320 - Ac3H11_3220 0.25 +0.2
128,320 - Ac3H11_3220 0.25 -0.8
128,481 + Ac3H11_3220 0.38 -0.3
128,481 + Ac3H11_3220 0.38 +0.3
128,481 + Ac3H11_3220 0.38 +1.0
128,481 + Ac3H11_3220 0.38 -0.6
128,481 + Ac3H11_3220 0.38 +1.0
128,482 - Ac3H11_3220 0.38 +0.1
128,482 - Ac3H11_3220 0.38 -0.6
128,482 - Ac3H11_3220 0.38 +0.7
128,482 - Ac3H11_3220 0.38 -2.5
128,482 - Ac3H11_3220 0.38 -0.9
128,532 + Ac3H11_3220 0.42 +0.7
128,532 + Ac3H11_3220 0.42 +0.2
128,532 + Ac3H11_3220 0.42 -1.2
128,533 - Ac3H11_3220 0.42 -1.4
128,533 - Ac3H11_3220 0.42 +1.2
128,880 + Ac3H11_3220 0.70 +0.7
128,880 + Ac3H11_3220 0.70 +0.1
128,880 + Ac3H11_3220 0.70 -0.3
128,880 + Ac3H11_3220 0.70 -0.2
128,881 - Ac3H11_3220 0.70 +0.0
128,881 - Ac3H11_3220 0.70 +0.6
128,881 - Ac3H11_3220 0.70 -1.4
128,881 - Ac3H11_3220 0.70 -0.9
129,006 + Ac3H11_3220 0.80 -0.6
129,006 + Ac3H11_3220 0.80 +0.0
129,006 + Ac3H11_3220 0.80 +0.6
129,007 - Ac3H11_3220 0.81 -0.4
129,007 - Ac3H11_3220 0.81 -0.2
129,075 + Ac3H11_3220 0.86 +0.7
129,076 - Ac3H11_3220 0.86 -0.1
129,114 + Ac3H11_3220 0.89 +1.0
129,114 + Ac3H11_3220 0.89 +0.0
129,114 + Ac3H11_3220 0.89 -0.4
129,114 + Ac3H11_3220 0.89 -1.5
129,115 - Ac3H11_3220 0.89 +0.1
129,115 - Ac3H11_3220 0.89 -1.1
129,115 - Ac3H11_3220 0.89 +1.6
129,115 - Ac3H11_3220 0.89 -0.9
129,194 - +3.6
129,194 - -0.2
129,194 - +0.5
129,220 - +0.1
129,260 - +0.0
129,403 + -0.8
129,664 - Ac3H11_3221 0.36 +0.4
129,703 + Ac3H11_3221 0.40 +1.6
129,703 + Ac3H11_3221 0.40 -1.8
129,703 + Ac3H11_3221 0.40 -0.2
129,703 + Ac3H11_3221 0.40 +0.6
129,703 + Ac3H11_3221 0.40 +1.1
129,704 - Ac3H11_3221 0.40 -0.5
129,704 - Ac3H11_3221 0.40 +0.5
129,704 - Ac3H11_3221 0.40 -0.4
129,704 - Ac3H11_3221 0.40 -0.4
129,704 - Ac3H11_3221 0.40 -1.1
129,704 - Ac3H11_3221 0.40 +1.1
129,704 - Ac3H11_3221 0.40 -0.7
129,978 + Ac3H11_3221 0.68 -1.1
129,978 + Ac3H11_3221 0.68 -0.9
129,978 + Ac3H11_3221 0.68 +1.4
129,978 + Ac3H11_3221 0.68 -0.8
129,978 + Ac3H11_3221 0.68 +0.8
129,978 + Ac3H11_3221 0.68 +1.0
129,979 - Ac3H11_3221 0.68 -0.2
129,979 - Ac3H11_3221 0.68 +0.1
130,056 + Ac3H11_3221 0.76 +0.2
130,056 + Ac3H11_3221 0.76 +0.3
130,056 + Ac3H11_3221 0.76 +0.5
130,056 + Ac3H11_3221 0.76 -0.2
130,056 + Ac3H11_3221 0.76 +0.2
130,056 + Ac3H11_3221 0.76 -0.3
130,056 + Ac3H11_3221 0.76 +0.0
130,057 - Ac3H11_3221 0.76 +0.0
130,057 - Ac3H11_3221 0.76 -0.3
130,057 - Ac3H11_3221 0.76 +0.1
130,057 - Ac3H11_3221 0.76 -2.2
130,057 - Ac3H11_3221 0.76 -0.4
130,057 - Ac3H11_3221 0.76 -1.8
130,057 - Ac3H11_3221 0.76 +0.5
130,057 - Ac3H11_3221 0.76 -0.7
130,265 + +1.3
130,266 - +1.0
130,266 - -0.9
130,266 - +1.1
130,622 + Ac3H11_3222 0.40 +0.1
130,622 + Ac3H11_3222 0.40 -0.0
130,622 + Ac3H11_3222 0.40 +1.6
130,622 + Ac3H11_3222 0.40 -1.4
130,623 - Ac3H11_3222 0.40 +0.9
130,623 - Ac3H11_3222 0.40 -0.3
130,623 - Ac3H11_3222 0.40 +0.2
130,623 - Ac3H11_3222 0.40 -0.6
130,623 - Ac3H11_3222 0.40 +0.4
130,623 - Ac3H11_3222 0.40 +2.4
131,004 + Ac3H11_3222 0.85 +0.6
131,004 + Ac3H11_3222 0.85 +1.3
131,054 + +0.6
131,054 + +0.4
131,054 + +0.8
131,055 - +0.4
131,055 - -0.0
131,055 - +0.1
131,090 + +0.0
131,090 + +0.2
131,090 + -1.0
131,091 - -0.3
131,091 - +1.0
131,091 - -0.2
131,091 - -0.8
131,091 - +0.5
131,091 - +0.3

Or see this region's nucleotide sequence