Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2271 and Ac3H11_2272 are separated by 98 nucleotides Ac3H11_2272 and Ac3H11_2273 are separated by 3 nucleotides Ac3H11_2273 and Ac3H11_2274 are separated by 156 nucleotides
Ac3H11_2271 - Response regulator, at 505,794 to 506,711
_2271
Ac3H11_2272 - Biotin synthase (EC 2.8.1.6), at 506,810 to 507,886
_2272
Ac3H11_2273 - hypothetical protein, at 507,890 to 508,162
_2273
Ac3H11_2274 - Methylmalonyl-CoA epimerase (EC 5.1.99.1), at 508,319 to 508,789
_2274
Position (kb) 506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.527 kb on - strand, within Ac3H11_2271 at 506.586 kb on + strand, within Ac3H11_2271 at 506.586 kb on + strand, within Ac3H11_2271 at 506.586 kb on + strand, within Ac3H11_2271 at 506.586 kb on + strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.587 kb on - strand, within Ac3H11_2271 at 506.690 kb on - strand at 506.779 kb on + strand at 506.779 kb on + strand at 506.938 kb on - strand, within Ac3H11_2272 at 506.938 kb on - strand, within Ac3H11_2272 at 507.285 kb on + strand, within Ac3H11_2272 at 507.286 kb on - strand, within Ac3H11_2272 at 507.312 kb on + strand, within Ac3H11_2272 at 507.312 kb on + strand, within Ac3H11_2272 at 507.312 kb on + strand, within Ac3H11_2272 at 507.312 kb on + strand, within Ac3H11_2272 at 507.313 kb on - strand, within Ac3H11_2272 at 507.313 kb on - strand, within Ac3H11_2272 at 507.316 kb on - strand, within Ac3H11_2272 at 507.316 kb on - strand, within Ac3H11_2272 at 507.316 kb on - strand, within Ac3H11_2272 at 507.345 kb on + strand, within Ac3H11_2272 at 507.345 kb on + strand, within Ac3H11_2272 at 507.345 kb on + strand, within Ac3H11_2272 at 507.345 kb on + strand, within Ac3H11_2272 at 507.345 kb on + strand, within Ac3H11_2272 at 507.345 kb on + strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.346 kb on - strand, within Ac3H11_2272 at 507.348 kb on + strand, within Ac3H11_2272 at 507.349 kb on - strand, within Ac3H11_2272 at 507.349 kb on - strand, within Ac3H11_2272 at 507.906 kb on + strand at 507.956 kb on + strand, within Ac3H11_2273 at 507.956 kb on + strand, within Ac3H11_2273 at 507.956 kb on + strand, within Ac3H11_2273 at 507.957 kb on - strand, within Ac3H11_2273 at 508.051 kb on - strand, within Ac3H11_2273 at 508.192 kb on - strand at 508.210 kb on + strand at 508.210 kb on + strand at 508.210 kb on + strand at 508.211 kb on - strand at 508.211 kb on - strand at 508.211 kb on - strand at 508.217 kb on - strand at 508.217 kb on - strand at 508.217 kb on - strand at 508.431 kb on + strand, within Ac3H11_2274 at 508.794 kb on - strand at 508.811 kb on + strand at 508.812 kb on - strand at 508.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 506,527 - Ac3H11_2271 0.80 +1.3 506,586 + Ac3H11_2271 0.86 -0.1 506,586 + Ac3H11_2271 0.86 -0.3 506,586 + Ac3H11_2271 0.86 +1.2 506,586 + Ac3H11_2271 0.86 +0.4 506,587 - Ac3H11_2271 0.86 -0.4 506,587 - Ac3H11_2271 0.86 -0.4 506,587 - Ac3H11_2271 0.86 +0.2 506,587 - Ac3H11_2271 0.86 -0.4 506,587 - Ac3H11_2271 0.86 +0.1 506,587 - Ac3H11_2271 0.86 +0.6 506,587 - Ac3H11_2271 0.86 -0.5 506,587 - Ac3H11_2271 0.86 -1.1 506,587 - Ac3H11_2271 0.86 -0.7 506,587 - Ac3H11_2271 0.86 +0.8 506,690 - +0.5 506,779 + -1.0 506,779 + -0.1 506,938 - Ac3H11_2272 0.12 -1.0 506,938 - Ac3H11_2272 0.12 -0.5 507,285 + Ac3H11_2272 0.44 -0.3 507,286 - Ac3H11_2272 0.44 -0.9 507,312 + Ac3H11_2272 0.47 -1.0 507,312 + Ac3H11_2272 0.47 -0.8 507,312 + Ac3H11_2272 0.47 -2.0 507,312 + Ac3H11_2272 0.47 -0.8 507,313 - Ac3H11_2272 0.47 +1.1 507,313 - Ac3H11_2272 0.47 +0.7 507,316 - Ac3H11_2272 0.47 -2.9 507,316 - Ac3H11_2272 0.47 +0.2 507,316 - Ac3H11_2272 0.47 -1.1 507,345 + Ac3H11_2272 0.50 -1.8 507,345 + Ac3H11_2272 0.50 -0.9 507,345 + Ac3H11_2272 0.50 -1.0 507,345 + Ac3H11_2272 0.50 -0.7 507,345 + Ac3H11_2272 0.50 -0.6 507,345 + Ac3H11_2272 0.50 -2.5 507,346 - Ac3H11_2272 0.50 -0.7 507,346 - Ac3H11_2272 0.50 -0.9 507,346 - Ac3H11_2272 0.50 +0.2 507,346 - Ac3H11_2272 0.50 -0.7 507,346 - Ac3H11_2272 0.50 -1.7 507,346 - Ac3H11_2272 0.50 -1.8 507,346 - Ac3H11_2272 0.50 +0.5 507,346 - Ac3H11_2272 0.50 -1.8 507,346 - Ac3H11_2272 0.50 +1.4 507,346 - Ac3H11_2272 0.50 -1.4 507,346 - Ac3H11_2272 0.50 -2.7 507,346 - Ac3H11_2272 0.50 -1.0 507,348 + Ac3H11_2272 0.50 -1.5 507,349 - Ac3H11_2272 0.50 -3.6 507,349 - Ac3H11_2272 0.50 -2.1 507,906 + -2.1 507,956 + Ac3H11_2273 0.24 -0.7 507,956 + Ac3H11_2273 0.24 -0.8 507,956 + Ac3H11_2273 0.24 -2.1 507,957 - Ac3H11_2273 0.25 -2.3 508,051 - Ac3H11_2273 0.59 -1.6 508,192 - +3.5 508,210 + -0.0 508,210 + -0.6 508,210 + -1.2 508,211 - +2.0 508,211 - -0.7 508,211 - -0.1 508,217 - -0.1 508,217 - +0.1 508,217 - -0.3 508,431 + Ac3H11_2274 0.24 +0.4 508,794 - -1.5 508,811 + -0.0 508,812 - -0.2 508,812 - +2.0
Or see this region's nucleotide sequence