Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1833

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1831 and Ac3H11_1832 are separated by 8 nucleotidesAc3H11_1832 and Ac3H11_1833 are separated by 119 nucleotidesAc3H11_1833 and Ac3H11_1834 are separated by 62 nucleotides Ac3H11_1831 - FIG01058644: hypothetical protein, at 32,132 to 32,440 _1831 Ac3H11_1832 - Glutathione S-transferase (EC 2.5.1.18), at 32,449 to 33,141 _1832 Ac3H11_1833 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 33,261 to 33,743 _1833 Ac3H11_1834 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 33,806 to 35,833 _1834 Position (kb) 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 32.315 kb on + strand, within Ac3H11_1831at 32.322 kb on + strand, within Ac3H11_1831at 32.322 kb on + strand, within Ac3H11_1831at 32.322 kb on + strand, within Ac3H11_1831at 32.323 kb on - strand, within Ac3H11_1831at 32.415 kb on + strandat 32.415 kb on + strandat 32.415 kb on + strandat 32.415 kb on + strandat 32.416 kb on - strandat 32.416 kb on - strandat 32.424 kb on + strandat 32.424 kb on + strandat 32.424 kb on + strandat 32.424 kb on + strandat 32.425 kb on - strandat 32.425 kb on - strandat 32.425 kb on - strandat 32.425 kb on - strandat 32.521 kb on + strand, within Ac3H11_1832at 32.522 kb on - strand, within Ac3H11_1832at 32.522 kb on - strand, within Ac3H11_1832at 32.564 kb on + strand, within Ac3H11_1832at 32.564 kb on + strand, within Ac3H11_1832at 32.564 kb on + strand, within Ac3H11_1832at 32.564 kb on + strand, within Ac3H11_1832at 32.565 kb on - strand, within Ac3H11_1832at 32.565 kb on - strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.597 kb on + strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.598 kb on - strand, within Ac3H11_1832at 32.630 kb on + strand, within Ac3H11_1832at 32.630 kb on + strand, within Ac3H11_1832at 32.631 kb on - strand, within Ac3H11_1832at 32.631 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.129 kb on - strandat 33.129 kb on - strandat 33.129 kb on - strandat 33.179 kb on + strandat 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.424 kb on + strand, within Ac3H11_1833at 33.425 kb on - strand, within Ac3H11_1833at 33.452 kb on - strand, within Ac3H11_1833at 33.520 kb on + strand, within Ac3H11_1833at 33.521 kb on - strand, within Ac3H11_1833at 33.521 kb on - strand, within Ac3H11_1833at 33.551 kb on - strand, within Ac3H11_1833at 33.697 kb on + strandat 33.698 kb on - strandat 33.698 kb on - strandat 33.753 kb on + strandat 33.754 kb on - strandat 33.771 kb on + strandat 33.772 kb on - strandat 33.772 kb on - strandat 33.801 kb on + strandat 33.801 kb on + strandat 33.801 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.839 kb on - strandat 33.839 kb on - strandat 33.839 kb on - strandat 33.839 kb on - strandat 33.839 kb on - strandat 34.046 kb on + strand, within Ac3H11_1834at 34.124 kb on + strand, within Ac3H11_1834at 34.124 kb on + strand, within Ac3H11_1834at 34.125 kb on - strand, within Ac3H11_1834at 34.244 kb on + strand, within Ac3H11_1834at 34.245 kb on - strand, within Ac3H11_1834at 34.316 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.368 kb on - strand, within Ac3H11_1834at 34.368 kb on - strand, within Ac3H11_1834at 34.368 kb on - strand, within Ac3H11_1834at 34.373 kb on + strand, within Ac3H11_1834at 34.373 kb on + strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.731 kb on - strand, within Ac3H11_1834

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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32,315 + Ac3H11_1831 0.59 +0.5
32,322 + Ac3H11_1831 0.61 +1.8
32,322 + Ac3H11_1831 0.61 -0.3
32,322 + Ac3H11_1831 0.61 -0.7
32,323 - Ac3H11_1831 0.62 +0.0
32,415 + -0.5
32,415 + -0.0
32,415 + +1.0
32,415 + -0.3
32,416 - +0.2
32,416 - -1.1
32,424 + -1.7
32,424 + -0.0
32,424 + +0.2
32,424 + -0.3
32,425 - +0.8
32,425 - -0.5
32,425 - -0.2
32,425 - +0.1
32,521 + Ac3H11_1832 0.10 -0.6
32,522 - Ac3H11_1832 0.11 +0.0
32,522 - Ac3H11_1832 0.11 +1.3
32,564 + Ac3H11_1832 0.17 +1.0
32,564 + Ac3H11_1832 0.17 -1.0
32,564 + Ac3H11_1832 0.17 -1.2
32,564 + Ac3H11_1832 0.17 +0.8
32,565 - Ac3H11_1832 0.17 -0.1
32,565 - Ac3H11_1832 0.17 -0.1
32,597 + Ac3H11_1832 0.21 +0.9
32,597 + Ac3H11_1832 0.21 -0.4
32,597 + Ac3H11_1832 0.21 +0.3
32,597 + Ac3H11_1832 0.21 +5.2
32,597 + Ac3H11_1832 0.21 -0.1
32,597 + Ac3H11_1832 0.21 -0.1
32,597 + Ac3H11_1832 0.21 +1.0
32,597 + Ac3H11_1832 0.21 -0.9
32,597 + Ac3H11_1832 0.21 +0.3
32,597 + Ac3H11_1832 0.21 -0.5
32,597 + Ac3H11_1832 0.21 -0.3
32,597 + Ac3H11_1832 0.21 -0.3
32,597 + Ac3H11_1832 0.21 +2.0
32,598 - Ac3H11_1832 0.22 -0.9
32,598 - Ac3H11_1832 0.22 +1.1
32,598 - Ac3H11_1832 0.22 -1.0
32,598 - Ac3H11_1832 0.22 +0.4
32,598 - Ac3H11_1832 0.22 +1.8
32,598 - Ac3H11_1832 0.22 +1.1
32,598 - Ac3H11_1832 0.22 +0.1
32,598 - Ac3H11_1832 0.22 -0.1
32,598 - Ac3H11_1832 0.22 +0.0
32,598 - Ac3H11_1832 0.22 +0.4
32,598 - Ac3H11_1832 0.22 +2.0
32,598 - Ac3H11_1832 0.22 -0.1
32,598 - Ac3H11_1832 0.22 +0.6
32,598 - Ac3H11_1832 0.22 -1.4
32,630 + Ac3H11_1832 0.26 +0.2
32,630 + Ac3H11_1832 0.26 +0.1
32,631 - Ac3H11_1832 0.26 -0.2
32,631 - Ac3H11_1832 0.26 +0.0
32,913 - Ac3H11_1832 0.67 -0.3
32,913 - Ac3H11_1832 0.67 +0.1
32,913 - Ac3H11_1832 0.67 +1.3
32,913 - Ac3H11_1832 0.67 -0.0
32,913 - Ac3H11_1832 0.67 +0.8
32,913 - Ac3H11_1832 0.67 +0.5
32,913 - Ac3H11_1832 0.67 -2.0
33,110 + -0.6
33,110 + -0.7
33,110 + -1.4
33,110 + +0.0
33,110 + -0.6
33,110 + -1.4
33,110 + +1.4
33,111 - -0.2
33,111 - +0.2
33,111 - +0.2
33,111 - -1.0
33,111 - +0.1
33,111 - -0.7
33,111 - -0.1
33,111 - -1.6
33,111 - -0.0
33,111 - +0.1
33,129 - +0.3
33,129 - -0.1
33,129 - -0.4
33,179 + +0.1
33,409 + Ac3H11_1833 0.31 -0.7
33,409 + Ac3H11_1833 0.31 -0.5
33,409 + Ac3H11_1833 0.31 +2.8
33,409 + Ac3H11_1833 0.31 +1.0
33,409 + Ac3H11_1833 0.31 -0.2
33,410 - Ac3H11_1833 0.31 -0.7
33,410 - Ac3H11_1833 0.31 -0.7
33,410 - Ac3H11_1833 0.31 -0.8
33,410 - Ac3H11_1833 0.31 +0.4
33,410 - Ac3H11_1833 0.31 -1.6
33,424 + Ac3H11_1833 0.34 +0.7
33,425 - Ac3H11_1833 0.34 +0.6
33,452 - Ac3H11_1833 0.40 -1.3
33,520 + Ac3H11_1833 0.54 -0.5
33,521 - Ac3H11_1833 0.54 -0.5
33,521 - Ac3H11_1833 0.54 -0.1
33,551 - Ac3H11_1833 0.60 -0.8
33,697 + +2.0
33,698 - -0.4
33,698 - +0.2
33,753 + +0.1
33,754 - -0.8
33,771 + -0.9
33,772 - +0.4
33,772 - -0.6
33,801 + +0.3
33,801 + -0.3
33,801 + -1.2
33,838 + -0.8
33,838 + -0.1
33,838 + -0.2
33,838 + +0.1
33,838 + -0.5
33,839 - +0.1
33,839 - +0.1
33,839 - -0.4
33,839 - +0.4
33,839 - -1.6
34,046 + Ac3H11_1834 0.12 -1.3
34,124 + Ac3H11_1834 0.16 -0.2
34,124 + Ac3H11_1834 0.16 -2.6
34,125 - Ac3H11_1834 0.16 -1.2
34,244 + Ac3H11_1834 0.22 -0.1
34,245 - Ac3H11_1834 0.22 -0.1
34,316 + Ac3H11_1834 0.25 -0.6
34,367 + Ac3H11_1834 0.28 -2.6
34,367 + Ac3H11_1834 0.28 -0.4
34,367 + Ac3H11_1834 0.28 -2.0
34,367 + Ac3H11_1834 0.28 -1.4
34,368 - Ac3H11_1834 0.28 -1.8
34,368 - Ac3H11_1834 0.28 -0.8
34,368 - Ac3H11_1834 0.28 -0.2
34,373 + Ac3H11_1834 0.28 +0.0
34,373 + Ac3H11_1834 0.28 -2.6
34,374 - Ac3H11_1834 0.28 -1.9
34,374 - Ac3H11_1834 0.28 -0.8
34,374 - Ac3H11_1834 0.28 +1.0
34,374 - Ac3H11_1834 0.28 -0.9
34,374 - Ac3H11_1834 0.28 -1.8
34,374 - Ac3H11_1834 0.28 -1.3
34,731 - Ac3H11_1834 0.46 +0.2

Or see this region's nucleotide sequence