Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1802 and Ac3H11_1803 are separated by 19 nucleotides Ac3H11_1803 and Ac3H11_1804 are separated by 89 nucleotides Ac3H11_1804 and Ac3H11_1805 are separated by 27 nucleotides
Ac3H11_1802 - HflC protein, at 23,448 to 24,356
_1802
Ac3H11_1803 - Putative inner membrane protein YjeT (clustered with HflC), at 24,376 to 24,564
_1803
Ac3H11_1804 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 24,654 to 25,802
_1804
Ac3H11_1805 - Adenylosuccinate synthetase (EC 6.3.4.4), at 25,830 to 27,206
_1805
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 23.715 kb on + strand, within Ac3H11_1802 at 23.715 kb on + strand, within Ac3H11_1802 at 23.715 kb on + strand, within Ac3H11_1802 at 23.716 kb on - strand, within Ac3H11_1802 at 23.716 kb on - strand, within Ac3H11_1802 at 23.716 kb on - strand, within Ac3H11_1802 at 23.716 kb on - strand, within Ac3H11_1802 at 23.748 kb on + strand, within Ac3H11_1802 at 23.749 kb on - strand, within Ac3H11_1802 at 23.749 kb on - strand, within Ac3H11_1802 at 23.749 kb on - strand, within Ac3H11_1802 at 23.957 kb on + strand, within Ac3H11_1802 at 23.958 kb on - strand, within Ac3H11_1802 at 23.958 kb on - strand, within Ac3H11_1802 at 23.958 kb on - strand, within Ac3H11_1802 at 23.973 kb on + strand, within Ac3H11_1802 at 23.973 kb on + strand, within Ac3H11_1802 at 23.973 kb on + strand, within Ac3H11_1802 at 23.973 kb on + strand, within Ac3H11_1802 at 23.974 kb on - strand, within Ac3H11_1802 at 23.974 kb on - strand, within Ac3H11_1802 at 23.974 kb on - strand, within Ac3H11_1802 at 23.974 kb on - strand, within Ac3H11_1802 at 24.123 kb on + strand, within Ac3H11_1802 at 24.123 kb on + strand, within Ac3H11_1802 at 24.178 kb on - strand, within Ac3H11_1802 at 24.237 kb on + strand, within Ac3H11_1802 at 24.238 kb on - strand, within Ac3H11_1802 at 24.238 kb on - strand, within Ac3H11_1802 at 24.238 kb on - strand, within Ac3H11_1802 at 24.238 kb on - strand, within Ac3H11_1802 at 24.354 kb on + strand at 24.354 kb on + strand at 24.354 kb on + strand at 24.354 kb on + strand at 24.354 kb on + strand at 24.354 kb on + strand at 24.354 kb on + strand at 24.355 kb on - strand at 24.355 kb on - strand at 24.355 kb on - strand at 24.355 kb on - strand at 24.355 kb on - strand at 24.355 kb on - strand at 24.509 kb on + strand, within Ac3H11_1803 at 24.510 kb on - strand at 24.510 kb on - strand, within Ac3H11_1803 at 24.562 kb on + strand at 24.585 kb on + strand at 24.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 23,715 + Ac3H11_1802 0.29 +0.3 23,715 + Ac3H11_1802 0.29 +0.1 23,715 + Ac3H11_1802 0.29 -1.2 23,716 - Ac3H11_1802 0.29 -0.4 23,716 - Ac3H11_1802 0.29 -1.2 23,716 - Ac3H11_1802 0.29 +0.4 23,716 - Ac3H11_1802 0.29 -2.1 23,748 + Ac3H11_1802 0.33 -2.2 23,749 - Ac3H11_1802 0.33 -2.9 23,749 - Ac3H11_1802 0.33 -2.9 23,749 - Ac3H11_1802 0.33 -1.4 23,957 + Ac3H11_1802 0.56 -2.4 23,958 - Ac3H11_1802 0.56 +1.2 23,958 - Ac3H11_1802 0.56 +0.1 23,958 - Ac3H11_1802 0.56 -1.0 23,973 + Ac3H11_1802 0.58 -2.0 23,973 + Ac3H11_1802 0.58 -2.1 23,973 + Ac3H11_1802 0.58 -1.7 23,973 + Ac3H11_1802 0.58 +0.1 23,974 - Ac3H11_1802 0.58 -1.6 23,974 - Ac3H11_1802 0.58 -0.5 23,974 - Ac3H11_1802 0.58 -0.2 23,974 - Ac3H11_1802 0.58 +0.3 24,123 + Ac3H11_1802 0.74 -3.0 24,123 + Ac3H11_1802 0.74 +0.3 24,178 - Ac3H11_1802 0.80 +0.4 24,237 + Ac3H11_1802 0.87 -0.0 24,238 - Ac3H11_1802 0.87 -1.3 24,238 - Ac3H11_1802 0.87 -0.7 24,238 - Ac3H11_1802 0.87 -0.3 24,238 - Ac3H11_1802 0.87 +0.3 24,354 + -1.1 24,354 + -0.2 24,354 + +0.6 24,354 + -1.0 24,354 + +0.3 24,354 + +2.6 24,354 + +2.4 24,355 - +3.4 24,355 - +1.6 24,355 - +0.6 24,355 - +1.7 24,355 - -0.6 24,355 - +0.4 24,509 + Ac3H11_1803 0.70 +0.0 24,510 - +1.8 24,510 - Ac3H11_1803 0.71 +2.3 24,562 + -2.0 24,585 + +0.2 24,619 + +1.1
Or see this region's nucleotide sequence