Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19540 and AZOBR_RS19545 are separated by 3 nucleotides AZOBR_RS19545 and AZOBR_RS19550 are separated by 98 nucleotides AZOBR_RS19550 and AZOBR_RS19555 are separated by 178 nucleotides
AZOBR_RS19540: AZOBR_RS19540 - ribonuclease E, at 1,155,911 to 1,157,167
_RS19540
AZOBR_RS19545: AZOBR_RS19545 - hypothetical protein, at 1,157,171 to 1,157,356
_RS19545
AZOBR_RS19550: AZOBR_RS19550 - tRNA-Phe, at 1,157,455 to 1,157,530
_RS19550
AZOBR_RS19555: AZOBR_RS19555 - alpha-(1 3)-fucosyltransferase, at 1,157,709 to 1,158,686
_RS19555
Position (kb) 1157
1158 Strain fitness (log2 ratio) -2
-1
0
1 at 1157.063 kb on + strand at 1157.064 kb on - strand at 1157.064 kb on - strand at 1157.301 kb on - strand, within AZOBR_RS19545 at 1157.371 kb on + strand at 1157.463 kb on - strand, within AZOBR_RS19550 at 1157.463 kb on - strand, within AZOBR_RS19550 at 1157.629 kb on - strand at 1158.105 kb on + strand, within AZOBR_RS19555 at 1158.106 kb on - strand, within AZOBR_RS19555 at 1158.121 kb on - strand, within AZOBR_RS19555 at 1158.229 kb on - strand, within AZOBR_RS19555 at 1158.418 kb on - strand, within AZOBR_RS19555 at 1158.468 kb on + strand, within AZOBR_RS19555 at 1158.469 kb on - strand, within AZOBR_RS19555 at 1158.469 kb on - strand, within AZOBR_RS19555 at 1158.469 kb on - strand, within AZOBR_RS19555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,157,063 + -1.2 1,157,064 - -1.8 1,157,064 - -1.4 1,157,301 - AZOBR_RS19545 0.70 +0.0 1,157,371 + -0.1 1,157,463 - AZOBR_RS19550 0.11 -2.5 1,157,463 - AZOBR_RS19550 0.11 -1.0 1,157,629 - +0.9 1,158,105 + AZOBR_RS19555 0.40 +0.3 1,158,106 - AZOBR_RS19555 0.41 -0.1 1,158,121 - AZOBR_RS19555 0.42 -0.6 1,158,229 - AZOBR_RS19555 0.53 -1.2 1,158,418 - AZOBR_RS19555 0.72 -0.6 1,158,468 + AZOBR_RS19555 0.78 -0.1 1,158,469 - AZOBR_RS19555 0.78 +0.0 1,158,469 - AZOBR_RS19555 0.78 +0.3 1,158,469 - AZOBR_RS19555 0.78 +0.8
Or see this region's nucleotide sequence