Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05210 and AZOBR_RS05215 are separated by 115 nucleotides AZOBR_RS05215 and AZOBR_RS05220 are separated by 119 nucleotides AZOBR_RS05220 and AZOBR_RS05225 overlap by 11 nucleotides AZOBR_RS05225 and AZOBR_RS05230 overlap by 4 nucleotides
AZOBR_RS05210: AZOBR_RS05210 - sulfate transporter, at 1,109,171 to 1,110,004
_RS05210
AZOBR_RS05215: AZOBR_RS05215 - ABC transporter permease, at 1,110,120 to 1,110,815
_RS05215
AZOBR_RS05220: AZOBR_RS05220 - formate dehydrogenase, at 1,110,935 to 1,111,816
_RS05220
AZOBR_RS05225: AZOBR_RS05225 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 1,111,806 to 1,112,432
_RS05225
AZOBR_RS05230: AZOBR_RS05230 - hypothetical protein, at 1,112,429 to 1,112,923
_RS05230
Position (kb) 1110
1111
1112 Strain fitness (log2 ratio) -1
0
1 at 1110.014 kb on - strand at 1110.064 kb on - strand at 1110.064 kb on - strand at 1110.427 kb on + strand, within AZOBR_RS05215 at 1110.428 kb on - strand, within AZOBR_RS05215 at 1110.428 kb on - strand, within AZOBR_RS05215 at 1110.428 kb on - strand, within AZOBR_RS05215 at 1110.815 kb on + strand at 1110.815 kb on + strand at 1110.816 kb on - strand at 1110.816 kb on - strand at 1110.831 kb on + strand at 1110.831 kb on + strand at 1110.958 kb on - strand at 1110.958 kb on - strand at 1111.119 kb on - strand, within AZOBR_RS05220 at 1111.238 kb on + strand, within AZOBR_RS05220 at 1111.238 kb on + strand, within AZOBR_RS05220 at 1111.368 kb on - strand, within AZOBR_RS05220 at 1111.368 kb on - strand, within AZOBR_RS05220 at 1111.407 kb on - strand, within AZOBR_RS05220 at 1111.466 kb on + strand, within AZOBR_RS05220 at 1111.466 kb on + strand, within AZOBR_RS05220 at 1111.467 kb on - strand, within AZOBR_RS05220 at 1111.467 kb on - strand, within AZOBR_RS05220 at 1111.514 kb on + strand, within AZOBR_RS05220 at 1111.515 kb on - strand, within AZOBR_RS05220 at 1111.515 kb on - strand, within AZOBR_RS05220 at 1112.354 kb on - strand, within AZOBR_RS05225 at 1112.654 kb on + strand, within AZOBR_RS05230 at 1112.654 kb on + strand, within AZOBR_RS05230 at 1112.655 kb on - strand, within AZOBR_RS05230 at 1112.777 kb on + strand, within AZOBR_RS05230 at 1112.778 kb on - strand, within AZOBR_RS05230 at 1112.778 kb on - strand, within AZOBR_RS05230 at 1112.778 kb on - strand, within AZOBR_RS05230
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,110,014 - +1.3 1,110,064 - -0.3 1,110,064 - -0.3 1,110,427 + AZOBR_RS05215 0.44 +1.5 1,110,428 - AZOBR_RS05215 0.44 -0.0 1,110,428 - AZOBR_RS05215 0.44 +0.1 1,110,428 - AZOBR_RS05215 0.44 -0.3 1,110,815 + +0.1 1,110,815 + -0.1 1,110,816 - +0.2 1,110,816 - +0.3 1,110,831 + +0.8 1,110,831 + +0.2 1,110,958 - -0.5 1,110,958 - +0.1 1,111,119 - AZOBR_RS05220 0.21 +0.1 1,111,238 + AZOBR_RS05220 0.34 +0.0 1,111,238 + AZOBR_RS05220 0.34 -0.5 1,111,368 - AZOBR_RS05220 0.49 -1.6 1,111,368 - AZOBR_RS05220 0.49 +1.3 1,111,407 - AZOBR_RS05220 0.54 -0.4 1,111,466 + AZOBR_RS05220 0.60 +0.9 1,111,466 + AZOBR_RS05220 0.60 -0.8 1,111,467 - AZOBR_RS05220 0.60 -0.9 1,111,467 - AZOBR_RS05220 0.60 -0.0 1,111,514 + AZOBR_RS05220 0.66 -0.9 1,111,515 - AZOBR_RS05220 0.66 -0.6 1,111,515 - AZOBR_RS05220 0.66 -0.7 1,112,354 - AZOBR_RS05225 0.87 -0.9 1,112,654 + AZOBR_RS05230 0.45 +0.3 1,112,654 + AZOBR_RS05230 0.45 +0.4 1,112,655 - AZOBR_RS05230 0.46 -0.3 1,112,777 + AZOBR_RS05230 0.70 +0.5 1,112,778 - AZOBR_RS05230 0.71 +0.4 1,112,778 - AZOBR_RS05230 0.71 +0.6 1,112,778 - AZOBR_RS05230 0.71 -0.5
Or see this region's nucleotide sequence