Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25615

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25605 and AO353_25610 overlap by 8 nucleotidesAO353_25610 and AO353_25615 overlap by 4 nucleotidesAO353_25615 and AO353_25620 are separated by 16 nucleotides AO353_25605: AO353_25605 - polysaccharide deacetylase, at 5,648,202 to 5,649,050 _25605 AO353_25610: AO353_25610 - polysaccharide deacetylase, at 5,649,043 to 5,649,930 _25610 AO353_25615: AO353_25615 - 2-methylcitrate dehydratase, at 5,649,927 to 5,651,276 _25615 AO353_25620: AO353_25620 - MFS transporter, at 5,651,293 to 5,652,492 _25620 Position (kb) 5649 5650 5651 5652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5649.087 kb on - strandat 5649.103 kb on + strandat 5649.103 kb on + strandat 5649.103 kb on + strandat 5649.103 kb on + strandat 5649.104 kb on - strandat 5649.104 kb on - strandat 5649.104 kb on - strandat 5649.104 kb on - strandat 5649.113 kb on + strandat 5649.113 kb on + strandat 5649.113 kb on + strandat 5649.114 kb on - strandat 5649.114 kb on - strandat 5649.331 kb on + strand, within AO353_25610at 5649.346 kb on + strand, within AO353_25610at 5649.346 kb on + strand, within AO353_25610at 5649.346 kb on + strand, within AO353_25610at 5649.347 kb on - strand, within AO353_25610at 5649.347 kb on - strand, within AO353_25610at 5649.347 kb on - strand, within AO353_25610at 5649.580 kb on + strand, within AO353_25610at 5649.580 kb on + strand, within AO353_25610at 5649.601 kb on + strand, within AO353_25610at 5649.601 kb on + strand, within AO353_25610at 5649.601 kb on + strand, within AO353_25610at 5649.602 kb on - strand, within AO353_25610at 5649.658 kb on + strand, within AO353_25610at 5649.658 kb on + strand, within AO353_25610at 5649.658 kb on + strand, within AO353_25610at 5649.659 kb on - strand, within AO353_25610at 5649.659 kb on - strand, within AO353_25610at 5649.666 kb on + strand, within AO353_25610at 5649.666 kb on + strand, within AO353_25610at 5649.667 kb on - strand, within AO353_25610at 5649.667 kb on - strand, within AO353_25610at 5649.667 kb on - strand, within AO353_25610at 5649.667 kb on - strand, within AO353_25610at 5649.721 kb on + strand, within AO353_25610at 5649.721 kb on + strandat 5649.721 kb on + strand, within AO353_25610at 5649.721 kb on + strand, within AO353_25610at 5649.721 kb on + strand, within AO353_25610at 5649.721 kb on + strand, within AO353_25610at 5649.721 kb on + strand, within AO353_25610at 5649.721 kb on + strand, within AO353_25610at 5649.722 kb on - strand, within AO353_25610at 5649.722 kb on - strand, within AO353_25610at 5649.898 kb on + strandat 5649.898 kb on + strandat 5649.919 kb on + strandat 5649.919 kb on + strandat 5649.920 kb on - strandat 5649.920 kb on - strandat 5649.920 kb on - strandat 5649.920 kb on - strandat 5649.920 kb on - strandat 5650.019 kb on + strandat 5650.020 kb on - strandat 5650.020 kb on - strandat 5650.020 kb on - strandat 5650.020 kb on - strandat 5650.020 kb on - strandat 5650.269 kb on - strand, within AO353_25615at 5650.295 kb on + strand, within AO353_25615at 5650.296 kb on - strand, within AO353_25615at 5650.432 kb on + strand, within AO353_25615at 5650.468 kb on + strand, within AO353_25615at 5650.469 kb on - strand, within AO353_25615at 5650.734 kb on + strand, within AO353_25615at 5650.734 kb on + strand, within AO353_25615at 5650.735 kb on - strand, within AO353_25615at 5650.911 kb on + strand, within AO353_25615at 5650.911 kb on + strand, within AO353_25615at 5650.959 kb on + strand, within AO353_25615at 5650.959 kb on + strand, within AO353_25615at 5650.959 kb on + strand, within AO353_25615at 5650.959 kb on + strand, within AO353_25615at 5650.959 kb on + strand, within AO353_25615at 5650.960 kb on - strand, within AO353_25615at 5650.960 kb on - strand, within AO353_25615at 5650.979 kb on + strand, within AO353_25615at 5650.980 kb on - strand, within AO353_25615at 5651.252 kb on + strandat 5651.253 kb on - strandat 5651.274 kb on + strandat 5651.299 kb on - strandat 5651.302 kb on + strandat 5651.302 kb on + strandat 5651.302 kb on + strandat 5651.303 kb on - strandat 5651.303 kb on - strandat 5651.474 kb on - strand, within AO353_25620at 5651.474 kb on - strand, within AO353_25620at 5651.482 kb on + strand, within AO353_25620at 5651.482 kb on + strand, within AO353_25620at 5651.482 kb on + strand, within AO353_25620at 5651.578 kb on + strand, within AO353_25620at 5651.578 kb on + strand, within AO353_25620at 5651.702 kb on - strand, within AO353_25620at 5651.704 kb on - strand, within AO353_25620at 5651.974 kb on + strand, within AO353_25620at 5651.975 kb on - strand, within AO353_25620at 5651.986 kb on + strand, within AO353_25620at 5651.986 kb on + strand, within AO353_25620at 5651.987 kb on - strand, within AO353_25620at 5651.987 kb on - strand, within AO353_25620at 5652.077 kb on - strand, within AO353_25620at 5652.236 kb on - strand, within AO353_25620

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,649,087 - -0.4
5,649,103 + +0.6
5,649,103 + +1.0
5,649,103 + -1.0
5,649,103 + +1.5
5,649,104 - -0.4
5,649,104 - +0.6
5,649,104 - +0.6
5,649,104 - -2.0
5,649,113 + -2.4
5,649,113 + -1.4
5,649,113 + -2.0
5,649,114 - -2.0
5,649,114 - +3.5
5,649,331 + AO353_25610 0.32 -1.4
5,649,346 + AO353_25610 0.34 -3.4
5,649,346 + AO353_25610 0.34 +0.2
5,649,346 + AO353_25610 0.34 -0.1
5,649,347 - AO353_25610 0.34 -3.2
5,649,347 - AO353_25610 0.34 +0.2
5,649,347 - AO353_25610 0.34 +2.4
5,649,580 + AO353_25610 0.60 +1.6
5,649,580 + AO353_25610 0.60 -2.4
5,649,601 + AO353_25610 0.63 +2.2
5,649,601 + AO353_25610 0.63 -2.0
5,649,601 + AO353_25610 0.63 -2.0
5,649,602 - AO353_25610 0.63 -3.2
5,649,658 + AO353_25610 0.69 +1.0
5,649,658 + AO353_25610 0.69 +3.4
5,649,658 + AO353_25610 0.69 -0.4
5,649,659 - AO353_25610 0.69 +1.9
5,649,659 - AO353_25610 0.69 -0.4
5,649,666 + AO353_25610 0.70 -1.7
5,649,666 + AO353_25610 0.70 +2.2
5,649,667 - AO353_25610 0.70 -1.4
5,649,667 - AO353_25610 0.70 +1.1
5,649,667 - AO353_25610 0.70 -2.0
5,649,667 - AO353_25610 0.70 -1.4
5,649,721 + AO353_25610 0.76 -0.6
5,649,721 + -0.4
5,649,721 + AO353_25610 0.76 +1.3
5,649,721 + AO353_25610 0.76 -4.0
5,649,721 + AO353_25610 0.76 -0.8
5,649,721 + AO353_25610 0.76 -2.7
5,649,721 + AO353_25610 0.76 +1.2
5,649,721 + AO353_25610 0.76 -1.4
5,649,722 - AO353_25610 0.76 -1.4
5,649,722 - AO353_25610 0.76 -2.0
5,649,898 + +2.6
5,649,898 + +0.6
5,649,919 + -0.4
5,649,919 + +1.8
5,649,920 - -0.1
5,649,920 - +1.5
5,649,920 - -1.4
5,649,920 - -1.0
5,649,920 - -0.4
5,650,019 + -0.4
5,650,020 - -0.4
5,650,020 - -2.0
5,650,020 - +1.0
5,650,020 - +2.7
5,650,020 - +1.4
5,650,269 - AO353_25615 0.25 -0.6
5,650,295 + AO353_25615 0.27 -0.4
5,650,296 - AO353_25615 0.27 +0.3
5,650,432 + AO353_25615 0.37 +2.3
5,650,468 + AO353_25615 0.40 -2.4
5,650,469 - AO353_25615 0.40 -2.0
5,650,734 + AO353_25615 0.60 -3.0
5,650,734 + AO353_25615 0.60 -2.4
5,650,735 - AO353_25615 0.60 +0.9
5,650,911 + AO353_25615 0.73 -2.4
5,650,911 + AO353_25615 0.73 -1.4
5,650,959 + AO353_25615 0.76 -3.6
5,650,959 + AO353_25615 0.76 -1.4
5,650,959 + AO353_25615 0.76 -1.4
5,650,959 + AO353_25615 0.76 -2.4
5,650,959 + AO353_25615 0.76 -0.4
5,650,960 - AO353_25615 0.77 -3.0
5,650,960 - AO353_25615 0.77 -1.4
5,650,979 + AO353_25615 0.78 -2.7
5,650,980 - AO353_25615 0.78 -0.6
5,651,252 + -2.4
5,651,253 - +0.4
5,651,274 + +0.8
5,651,299 - +2.1
5,651,302 + -0.4
5,651,302 + +1.8
5,651,302 + +1.2
5,651,303 - -2.7
5,651,303 - +1.1
5,651,474 - AO353_25620 0.15 +1.5
5,651,474 - AO353_25620 0.15 -1.1
5,651,482 + AO353_25620 0.16 +2.6
5,651,482 + AO353_25620 0.16 +0.1
5,651,482 + AO353_25620 0.16 -2.7
5,651,578 + AO353_25620 0.24 -1.0
5,651,578 + AO353_25620 0.24 -1.4
5,651,702 - AO353_25620 0.34 -1.4
5,651,704 - AO353_25620 0.34 -0.4
5,651,974 + AO353_25620 0.57 +0.5
5,651,975 - AO353_25620 0.57 -1.4
5,651,986 + AO353_25620 0.58 -0.6
5,651,986 + AO353_25620 0.58 -1.7
5,651,987 - AO353_25620 0.58 -2.4
5,651,987 - AO353_25620 0.58 -1.4
5,652,077 - AO353_25620 0.65 -1.4
5,652,236 - AO353_25620 0.79 +0.5

Or see this region's nucleotide sequence