Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25155

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25150 and AO353_25155 overlap by 4 nucleotidesAO353_25155 and AO353_25160 are separated by 33 nucleotides AO353_25150: AO353_25150 - acetoin dehydrogenase, at 5,548,160 to 5,549,272 _25150 AO353_25155: AO353_25155 - pyruvate dehydrogenase, at 5,549,269 to 5,550,288 _25155 AO353_25160: AO353_25160 - ABC transporter substrate-binding protein, at 5,550,322 to 5,551,299 _25160 AO353_25165: AO353_25165 - ATP-NAD kinase, at 5,551,277 to 5,552,377 _25165 Position (kb) 5549 5550 5551Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5548.434 kb on + strand, within AO353_25150at 5548.434 kb on + strand, within AO353_25150at 5548.434 kb on + strand, within AO353_25150at 5548.434 kb on + strandat 5548.435 kb on - strand, within AO353_25150at 5548.435 kb on - strand, within AO353_25150at 5548.549 kb on - strand, within AO353_25150at 5548.549 kb on - strand, within AO353_25150at 5548.712 kb on + strand, within AO353_25150at 5548.713 kb on - strand, within AO353_25150at 5548.757 kb on - strand, within AO353_25150at 5548.834 kb on + strand, within AO353_25150at 5548.835 kb on - strand, within AO353_25150at 5548.899 kb on + strandat 5549.258 kb on - strandat 5549.258 kb on - strandat 5549.258 kb on - strandat 5549.258 kb on - strandat 5549.336 kb on + strandat 5549.336 kb on + strandat 5549.336 kb on + strandat 5549.336 kb on + strandat 5549.337 kb on - strandat 5549.337 kb on - strandat 5549.337 kb on - strandat 5549.337 kb on - strandat 5549.374 kb on - strand, within AO353_25155at 5549.374 kb on - strand, within AO353_25155at 5549.445 kb on + strand, within AO353_25155at 5549.445 kb on + strand, within AO353_25155at 5549.445 kb on + strand, within AO353_25155at 5549.488 kb on + strand, within AO353_25155at 5549.489 kb on - strand, within AO353_25155at 5549.523 kb on + strand, within AO353_25155at 5549.523 kb on + strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.710 kb on + strand, within AO353_25155at 5549.711 kb on - strand, within AO353_25155at 5549.729 kb on + strand, within AO353_25155at 5549.729 kb on + strand, within AO353_25155at 5549.784 kb on + strand, within AO353_25155at 5549.951 kb on + strand, within AO353_25155at 5550.026 kb on - strand, within AO353_25155at 5550.026 kb on - strand, within AO353_25155at 5550.071 kb on + strand, within AO353_25155at 5550.122 kb on + strand, within AO353_25155at 5550.123 kb on - strand, within AO353_25155at 5550.269 kb on + strandat 5550.310 kb on + strandat 5550.311 kb on - strandat 5550.312 kb on + strandat 5550.312 kb on + strandat 5550.313 kb on - strandat 5550.313 kb on - strandat 5550.338 kb on + strandat 5550.339 kb on - strandat 5550.339 kb on - strandat 5550.573 kb on - strand, within AO353_25160at 5550.576 kb on - strand, within AO353_25160at 5551.037 kb on + strand, within AO353_25160at 5551.037 kb on + strand, within AO353_25160at 5551.038 kb on - strand, within AO353_25160at 5551.060 kb on + strand, within AO353_25160at 5551.060 kb on + strand, within AO353_25160at 5551.060 kb on + strand, within AO353_25160at 5551.061 kb on - strand, within AO353_25160at 5551.172 kb on + strand, within AO353_25160at 5551.172 kb on + strand, within AO353_25160at 5551.173 kb on - strand, within AO353_25160at 5551.173 kb on - strand, within AO353_25160

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,548,434 + AO353_25150 0.25 +0.8
5,548,434 + AO353_25150 0.25 -0.4
5,548,434 + AO353_25150 0.25 -2.0
5,548,434 + -0.4
5,548,435 - AO353_25150 0.25 -1.4
5,548,435 - AO353_25150 0.25 -1.4
5,548,549 - AO353_25150 0.35 +1.4
5,548,549 - AO353_25150 0.35 -1.4
5,548,712 + AO353_25150 0.50 +1.3
5,548,713 - AO353_25150 0.50 -2.4
5,548,757 - AO353_25150 0.54 +0.4
5,548,834 + AO353_25150 0.61 +1.8
5,548,835 - AO353_25150 0.61 -2.0
5,548,899 + -1.4
5,549,258 - +2.2
5,549,258 - -2.0
5,549,258 - -1.1
5,549,258 - -1.7
5,549,336 + -2.0
5,549,336 + +0.6
5,549,336 + +0.3
5,549,336 + -3.0
5,549,337 - -1.4
5,549,337 - +0.9
5,549,337 - +2.7
5,549,337 - +2.2
5,549,374 - AO353_25155 0.10 -1.1
5,549,374 - AO353_25155 0.10 +1.0
5,549,445 + AO353_25155 0.17 -0.4
5,549,445 + AO353_25155 0.17 -0.4
5,549,445 + AO353_25155 0.17 -1.4
5,549,488 + AO353_25155 0.21 -1.0
5,549,489 - AO353_25155 0.22 -2.0
5,549,523 + AO353_25155 0.25 +2.8
5,549,523 + AO353_25155 0.25 -1.0
5,549,524 - AO353_25155 0.25 +0.0
5,549,524 - AO353_25155 0.25 -1.1
5,549,524 - AO353_25155 0.25 -0.4
5,549,524 - AO353_25155 0.25 -2.0
5,549,633 + AO353_25155 0.36 +1.6
5,549,633 + AO353_25155 0.36 -1.0
5,549,633 + AO353_25155 0.36 -2.0
5,549,633 + AO353_25155 0.36 +1.4
5,549,694 + AO353_25155 0.42 -2.7
5,549,694 + AO353_25155 0.42 -0.4
5,549,694 + AO353_25155 0.42 -0.4
5,549,694 + AO353_25155 0.42 +0.9
5,549,695 - AO353_25155 0.42 -1.4
5,549,695 - AO353_25155 0.42 +0.9
5,549,695 - AO353_25155 0.42 +0.2
5,549,695 - AO353_25155 0.42 +0.2
5,549,695 - AO353_25155 0.42 -2.0
5,549,696 + AO353_25155 0.42 -1.4
5,549,696 + AO353_25155 0.42 -2.0
5,549,696 + AO353_25155 0.42 -1.8
5,549,696 + AO353_25155 0.42 +0.6
5,549,696 + AO353_25155 0.42 +0.2
5,549,697 - AO353_25155 0.42 +0.2
5,549,697 - AO353_25155 0.42 +1.2
5,549,697 - AO353_25155 0.42 -2.0
5,549,697 - AO353_25155 0.42 +2.2
5,549,697 - AO353_25155 0.42 -0.2
5,549,710 + AO353_25155 0.43 -0.4
5,549,711 - AO353_25155 0.43 -2.0
5,549,729 + AO353_25155 0.45 +2.0
5,549,729 + AO353_25155 0.45 +0.7
5,549,784 + AO353_25155 0.50 +1.2
5,549,951 + AO353_25155 0.67 +0.9
5,550,026 - AO353_25155 0.74 -2.0
5,550,026 - AO353_25155 0.74 -2.6
5,550,071 + AO353_25155 0.79 -1.4
5,550,122 + AO353_25155 0.84 -1.8
5,550,123 - AO353_25155 0.84 +0.6
5,550,269 + -1.4
5,550,310 + +1.4
5,550,311 - -1.4
5,550,312 + +2.6
5,550,312 + -2.7
5,550,313 - +1.2
5,550,313 - +0.6
5,550,338 + +2.8
5,550,339 - +3.4
5,550,339 - +2.8
5,550,573 - AO353_25160 0.26 -2.4
5,550,576 - AO353_25160 0.26 +1.2
5,551,037 + AO353_25160 0.73 -1.4
5,551,037 + AO353_25160 0.73 +2.8
5,551,038 - AO353_25160 0.73 +2.4
5,551,060 + AO353_25160 0.75 +0.9
5,551,060 + AO353_25160 0.75 -2.0
5,551,060 + AO353_25160 0.75 -2.4
5,551,061 - AO353_25160 0.76 -1.4
5,551,172 + AO353_25160 0.87 -2.0
5,551,172 + AO353_25160 0.87 +1.2
5,551,173 - AO353_25160 0.87 -0.4
5,551,173 - AO353_25160 0.87 +1.1

Or see this region's nucleotide sequence