Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24775

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24770 and AO353_24775 overlap by 4 nucleotidesAO353_24775 and AO353_24780 are separated by 80 nucleotides AO353_24770: AO353_24770 - FAD-dependent oxidoreductase, at 5,459,681 to 5,460,991 _24770 AO353_24775: AO353_24775 - ABC transporter substrate-binding protein, at 5,460,988 to 5,462,076 _24775 AO353_24780: AO353_24780 - glutamine synthetase, at 5,462,157 to 5,463,515 _24780 Position (kb) 5460 5461 5462 5463Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5460.024 kb on + strand, within AO353_24770at 5460.024 kb on + strand, within AO353_24770at 5460.024 kb on + strand, within AO353_24770at 5460.025 kb on - strand, within AO353_24770at 5460.025 kb on - strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.109 kb on - strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.459 kb on + strand, within AO353_24770at 5460.460 kb on - strand, within AO353_24770at 5460.460 kb on - strand, within AO353_24770at 5460.580 kb on + strand, within AO353_24770at 5460.580 kb on + strand, within AO353_24770at 5460.580 kb on + strand, within AO353_24770at 5460.581 kb on - strand, within AO353_24770at 5460.685 kb on - strand, within AO353_24770at 5460.709 kb on - strand, within AO353_24770at 5460.942 kb on + strandat 5460.942 kb on + strandat 5460.943 kb on - strandat 5460.946 kb on - strandat 5460.974 kb on + strandat 5460.974 kb on + strandat 5460.974 kb on + strandat 5460.974 kb on + strandat 5460.974 kb on + strandat 5460.975 kb on - strandat 5460.975 kb on - strandat 5460.975 kb on - strandat 5460.976 kb on + strandat 5460.993 kb on + strandat 5460.993 kb on + strandat 5460.994 kb on - strandat 5461.064 kb on + strandat 5461.064 kb on + strandat 5461.064 kb on + strandat 5461.065 kb on - strandat 5461.065 kb on - strandat 5461.094 kb on + strandat 5461.095 kb on - strandat 5461.208 kb on + strand, within AO353_24775at 5461.208 kb on + strand, within AO353_24775at 5461.208 kb on + strand, within AO353_24775at 5461.208 kb on + strand, within AO353_24775at 5461.209 kb on - strand, within AO353_24775at 5461.209 kb on - strand, within AO353_24775at 5461.209 kb on - strand, within AO353_24775at 5461.209 kb on - strand, within AO353_24775at 5461.209 kb on - strand, within AO353_24775at 5461.209 kb on - strand, within AO353_24775at 5461.209 kb on - strand, within AO353_24775at 5461.433 kb on + strand, within AO353_24775at 5461.434 kb on - strandat 5461.442 kb on + strand, within AO353_24775at 5461.442 kb on + strand, within AO353_24775at 5461.443 kb on - strand, within AO353_24775at 5461.443 kb on - strand, within AO353_24775at 5461.443 kb on - strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strand, within AO353_24775at 5461.520 kb on + strandat 5461.520 kb on + strand, within AO353_24775at 5461.521 kb on - strand, within AO353_24775at 5461.521 kb on - strand, within AO353_24775at 5461.540 kb on + strand, within AO353_24775at 5461.697 kb on + strand, within AO353_24775at 5461.697 kb on + strand, within AO353_24775at 5461.697 kb on + strand, within AO353_24775at 5461.697 kb on + strand, within AO353_24775at 5461.753 kb on - strand, within AO353_24775at 5461.912 kb on + strand, within AO353_24775at 5461.913 kb on - strand, within AO353_24775at 5461.913 kb on - strand, within AO353_24775at 5461.919 kb on + strand, within AO353_24775at 5461.919 kb on + strand, within AO353_24775at 5461.919 kb on + strand, within AO353_24775at 5461.920 kb on - strand, within AO353_24775at 5461.974 kb on + strandat 5461.974 kb on + strandat 5461.974 kb on + strandat 5461.975 kb on - strandat 5461.976 kb on + strandat 5461.976 kb on + strandat 5461.976 kb on + strandat 5461.976 kb on + strandat 5461.976 kb on + strandat 5461.977 kb on - strandat 5461.977 kb on - strandat 5461.977 kb on - strandat 5461.977 kb on - strandat 5461.977 kb on - strandat 5461.991 kb on + strandat 5461.991 kb on + strandat 5461.992 kb on - strandat 5461.992 kb on - strandat 5462.068 kb on + strandat 5462.068 kb on + strandat 5462.069 kb on - strandat 5462.269 kb on + strandat 5462.350 kb on + strand, within AO353_24780at 5462.438 kb on - strand, within AO353_24780at 5462.627 kb on - strand, within AO353_24780at 5462.792 kb on + strand, within AO353_24780at 5462.793 kb on - strand, within AO353_24780

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,460,024 + AO353_24770 0.26 +0.6
5,460,024 + AO353_24770 0.26 +1.8
5,460,024 + AO353_24770 0.26 +0.8
5,460,025 - AO353_24770 0.26 +2.7
5,460,025 - AO353_24770 0.26 +2.0
5,460,108 + AO353_24770 0.33 -0.4
5,460,108 + AO353_24770 0.33 -0.4
5,460,108 + AO353_24770 0.33 +1.4
5,460,108 + AO353_24770 0.33 +0.6
5,460,109 - AO353_24770 0.33 +0.6
5,460,201 + AO353_24770 0.40 +1.2
5,460,201 + AO353_24770 0.40 -0.4
5,460,201 + AO353_24770 0.40 +1.2
5,460,201 + AO353_24770 0.40 -0.4
5,460,201 + AO353_24770 0.40 +1.8
5,460,201 + AO353_24770 0.40 -1.4
5,460,201 + AO353_24770 0.40 +0.6
5,460,202 - AO353_24770 0.40 +0.4
5,460,202 - AO353_24770 0.40 -1.4
5,460,202 - AO353_24770 0.40 +1.9
5,460,202 - AO353_24770 0.40 +1.4
5,460,202 - AO353_24770 0.40 +0.6
5,460,202 - AO353_24770 0.40 -0.7
5,460,459 + AO353_24770 0.59 -2.0
5,460,460 - AO353_24770 0.59 +0.3
5,460,460 - AO353_24770 0.59 -1.4
5,460,580 + AO353_24770 0.69 +1.9
5,460,580 + AO353_24770 0.69 +2.1
5,460,580 + AO353_24770 0.69 -1.4
5,460,581 - AO353_24770 0.69 +0.5
5,460,685 - AO353_24770 0.77 -0.4
5,460,709 - AO353_24770 0.78 +1.6
5,460,942 + -2.4
5,460,942 + -3.7
5,460,943 - -0.4
5,460,946 - +0.0
5,460,974 + -0.4
5,460,974 + +3.4
5,460,974 + +0.6
5,460,974 + -3.0
5,460,974 + +1.8
5,460,975 - -2.0
5,460,975 - +0.5
5,460,975 - +0.6
5,460,976 + +1.0
5,460,993 + -1.4
5,460,993 + +0.6
5,460,994 - +2.4
5,461,064 + +1.8
5,461,064 + +1.8
5,461,064 + -1.4
5,461,065 - -0.4
5,461,065 - +0.8
5,461,094 + -1.7
5,461,095 - -3.4
5,461,208 + AO353_24775 0.20 +3.3
5,461,208 + AO353_24775 0.20 -2.7
5,461,208 + AO353_24775 0.20 -2.0
5,461,208 + AO353_24775 0.20 -1.4
5,461,209 - AO353_24775 0.20 +0.1
5,461,209 - AO353_24775 0.20 -0.8
5,461,209 - AO353_24775 0.20 -1.2
5,461,209 - AO353_24775 0.20 -1.4
5,461,209 - AO353_24775 0.20 -2.0
5,461,209 - AO353_24775 0.20 -1.4
5,461,209 - AO353_24775 0.20 -3.0
5,461,433 + AO353_24775 0.41 -0.6
5,461,434 - +0.6
5,461,442 + AO353_24775 0.42 -1.4
5,461,442 + AO353_24775 0.42 +0.2
5,461,443 - AO353_24775 0.42 +2.7
5,461,443 - AO353_24775 0.42 -2.0
5,461,443 - AO353_24775 0.42 -0.4
5,461,520 + AO353_24775 0.49 -0.4
5,461,520 + AO353_24775 0.49 -2.0
5,461,520 + AO353_24775 0.49 -2.0
5,461,520 + AO353_24775 0.49 -2.7
5,461,520 + AO353_24775 0.49 -1.4
5,461,520 + AO353_24775 0.49 +2.9
5,461,520 + AO353_24775 0.49 -0.4
5,461,520 + AO353_24775 0.49 +0.8
5,461,520 + AO353_24775 0.49 +0.3
5,461,520 + -1.4
5,461,520 + AO353_24775 0.49 +0.2
5,461,521 - AO353_24775 0.49 -2.0
5,461,521 - AO353_24775 0.49 -2.7
5,461,540 + AO353_24775 0.51 -2.0
5,461,697 + AO353_24775 0.65 -3.0
5,461,697 + AO353_24775 0.65 -0.4
5,461,697 + AO353_24775 0.65 -2.0
5,461,697 + AO353_24775 0.65 +1.6
5,461,753 - AO353_24775 0.70 -0.9
5,461,912 + AO353_24775 0.85 +4.6
5,461,913 - AO353_24775 0.85 +0.6
5,461,913 - AO353_24775 0.85 -1.4
5,461,919 + AO353_24775 0.85 -0.4
5,461,919 + AO353_24775 0.85 -1.4
5,461,919 + AO353_24775 0.85 -2.4
5,461,920 - AO353_24775 0.86 +0.2
5,461,974 + +0.6
5,461,974 + +0.6
5,461,974 + +2.4
5,461,975 - +0.6
5,461,976 + +1.2
5,461,976 + +1.3
5,461,976 + +0.2
5,461,976 + -2.7
5,461,976 + +1.8
5,461,977 - -0.4
5,461,977 - +1.0
5,461,977 - -0.8
5,461,977 - -0.9
5,461,977 - -2.0
5,461,991 + +3.2
5,461,991 + -1.4
5,461,992 - -0.4
5,461,992 - -3.0
5,462,068 + -1.4
5,462,068 + +2.5
5,462,069 - +1.6
5,462,269 + -2.1
5,462,350 + AO353_24780 0.14 +1.2
5,462,438 - AO353_24780 0.21 -0.4
5,462,627 - AO353_24780 0.35 -0.4
5,462,792 + AO353_24780 0.47 -1.1
5,462,793 - AO353_24780 0.47 -2.0

Or see this region's nucleotide sequence