Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23385

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23380 and AO353_23385 are separated by 347 nucleotidesAO353_23385 and AO353_23390 are separated by 59 nucleotidesAO353_23390 and AO353_23395 are separated by 19 nucleotides AO353_23380: AO353_23380 - hypothetical protein, at 5,124,275 to 5,125,576 _23380 AO353_23385: AO353_23385 - trans-2-enoyl-CoA reductase, at 5,125,924 to 5,127,120 _23385 AO353_23390: AO353_23390 - transcriptional regulator, at 5,127,180 to 5,127,845 _23390 AO353_23395: AO353_23395 - hypothetical protein, at 5,127,865 to 5,128,494 _23395 Position (kb) 5125 5126 5127 5128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5124.945 kb on + strand, within AO353_23380at 5124.945 kb on + strand, within AO353_23380at 5124.945 kb on + strand, within AO353_23380at 5124.945 kb on + strand, within AO353_23380at 5124.945 kb on + strand, within AO353_23380at 5124.945 kb on + strand, within AO353_23380at 5124.945 kb on + strand, within AO353_23380at 5124.945 kb on + strandat 5124.945 kb on + strand, within AO353_23380at 5124.946 kb on - strand, within AO353_23380at 5124.946 kb on - strand, within AO353_23380at 5124.946 kb on - strand, within AO353_23380at 5124.946 kb on - strand, within AO353_23380at 5124.946 kb on - strand, within AO353_23380at 5124.946 kb on - strand, within AO353_23380at 5125.057 kb on - strand, within AO353_23380at 5125.072 kb on + strand, within AO353_23380at 5125.072 kb on + strand, within AO353_23380at 5125.073 kb on - strand, within AO353_23380at 5125.073 kb on - strand, within AO353_23380at 5125.101 kb on + strandat 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.101 kb on + strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.102 kb on - strand, within AO353_23380at 5125.131 kb on + strand, within AO353_23380at 5125.131 kb on + strand, within AO353_23380at 5125.194 kb on + strand, within AO353_23380at 5125.194 kb on + strand, within AO353_23380at 5125.194 kb on + strandat 5125.194 kb on + strand, within AO353_23380at 5125.195 kb on - strand, within AO353_23380at 5125.195 kb on - strand, within AO353_23380at 5125.195 kb on - strand, within AO353_23380at 5125.195 kb on - strand, within AO353_23380at 5125.195 kb on - strand, within AO353_23380at 5125.198 kb on + strand, within AO353_23380at 5125.198 kb on + strand, within AO353_23380at 5125.198 kb on + strand, within AO353_23380at 5125.198 kb on + strand, within AO353_23380at 5125.198 kb on + strand, within AO353_23380at 5125.199 kb on - strand, within AO353_23380at 5125.199 kb on - strand, within AO353_23380at 5125.199 kb on - strand, within AO353_23380at 5125.199 kb on - strand, within AO353_23380at 5125.199 kb on - strand, within AO353_23380at 5125.199 kb on - strand, within AO353_23380at 5125.199 kb on - strand, within AO353_23380at 5125.335 kb on + strand, within AO353_23380at 5125.336 kb on - strand, within AO353_23380at 5125.336 kb on - strand, within AO353_23380at 5125.411 kb on + strand, within AO353_23380at 5125.411 kb on + strand, within AO353_23380at 5125.411 kb on + strand, within AO353_23380at 5125.411 kb on + strand, within AO353_23380at 5125.411 kb on + strand, within AO353_23380at 5125.412 kb on - strand, within AO353_23380at 5125.412 kb on - strand, within AO353_23380at 5125.412 kb on - strand, within AO353_23380at 5125.412 kb on - strand, within AO353_23380at 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.674 kb on - strandat 5125.674 kb on - strandat 5125.685 kb on + strandat 5125.728 kb on + strandat 5125.729 kb on - strandat 5125.729 kb on - strandat 5125.788 kb on + strandat 5125.788 kb on + strandat 5125.788 kb on + strandat 5125.870 kb on + strandat 5125.879 kb on + strandat 5125.879 kb on + strandat 5125.879 kb on + strandat 5125.880 kb on - strandat 5125.880 kb on - strandat 5125.880 kb on - strandat 5125.889 kb on - strandat 5125.919 kb on + strandat 5125.919 kb on + strandat 5125.919 kb on + strandat 5125.919 kb on + strandat 5125.920 kb on - strandat 5125.920 kb on - strandat 5125.920 kb on - strandat 5125.920 kb on - strandat 5125.920 kb on - strandat 5125.923 kb on + strandat 5125.923 kb on + strandat 5125.923 kb on + strandat 5125.923 kb on + strandat 5125.923 kb on + strandat 5125.924 kb on - strandat 5125.924 kb on - strandat 5125.924 kb on - strandat 5125.924 kb on - strandat 5126.011 kb on + strandat 5126.189 kb on - strand, within AO353_23385at 5126.189 kb on - strand, within AO353_23385at 5126.189 kb on - strand, within AO353_23385at 5126.234 kb on - strand, within AO353_23385at 5126.380 kb on + strand, within AO353_23385at 5126.380 kb on + strand, within AO353_23385at 5126.497 kb on - strand, within AO353_23385at 5126.596 kb on + strand, within AO353_23385at 5126.626 kb on + strand, within AO353_23385at 5126.626 kb on + strand, within AO353_23385at 5126.627 kb on - strand, within AO353_23385at 5126.782 kb on + strand, within AO353_23385at 5126.782 kb on + strand, within AO353_23385at 5126.782 kb on + strand, within AO353_23385at 5126.783 kb on - strand, within AO353_23385at 5126.783 kb on - strand, within AO353_23385at 5126.783 kb on - strand, within AO353_23385at 5126.849 kb on - strand, within AO353_23385at 5126.857 kb on + strand, within AO353_23385at 5126.858 kb on - strand, within AO353_23385at 5126.920 kb on + strand, within AO353_23385at 5126.920 kb on + strand, within AO353_23385at 5126.921 kb on - strand, within AO353_23385at 5126.921 kb on - strand, within AO353_23385at 5126.960 kb on + strand, within AO353_23385at 5126.960 kb on + strand, within AO353_23385at 5126.961 kb on - strand, within AO353_23385at 5126.961 kb on - strand, within AO353_23385at 5127.016 kb on + strandat 5127.016 kb on + strandat 5127.017 kb on - strandat 5127.068 kb on - strandat 5127.118 kb on + strandat 5127.118 kb on + strandat 5127.118 kb on + strandat 5127.118 kb on + strandat 5127.119 kb on - strandat 5127.119 kb on - strandat 5127.119 kb on - strandat 5127.119 kb on - strandat 5127.602 kb on - strand, within AO353_23390at 5127.644 kb on - strand, within AO353_23390at 5127.780 kb on - strandat 5127.925 kb on + strandat 5127.925 kb on + strandat 5127.925 kb on + strandat 5127.926 kb on - strandat 5127.926 kb on - strandat 5127.926 kb on - strandat 5127.928 kb on - strand, within AO353_23395at 5127.928 kb on - strand, within AO353_23395at 5127.969 kb on - strand, within AO353_23395

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,124,945 + AO353_23380 0.51 +0.4
5,124,945 + AO353_23380 0.51 -1.7
5,124,945 + AO353_23380 0.51 -0.1
5,124,945 + AO353_23380 0.51 +0.0
5,124,945 + AO353_23380 0.51 -0.4
5,124,945 + AO353_23380 0.51 +2.4
5,124,945 + AO353_23380 0.51 -3.0
5,124,945 + +1.6
5,124,945 + AO353_23380 0.51 +0.2
5,124,946 - AO353_23380 0.52 +1.9
5,124,946 - AO353_23380 0.52 -0.1
5,124,946 - AO353_23380 0.52 -0.4
5,124,946 - AO353_23380 0.52 -1.4
5,124,946 - AO353_23380 0.52 -2.4
5,124,946 - AO353_23380 0.52 -2.0
5,125,057 - AO353_23380 0.60 -2.0
5,125,072 + AO353_23380 0.61 -1.3
5,125,072 + AO353_23380 0.61 -1.0
5,125,073 - AO353_23380 0.61 -0.1
5,125,073 - AO353_23380 0.61 -0.2
5,125,101 + -0.4
5,125,101 + AO353_23380 0.63 -0.4
5,125,101 + AO353_23380 0.63 -0.4
5,125,101 + AO353_23380 0.63 -1.4
5,125,101 + AO353_23380 0.63 -2.7
5,125,101 + AO353_23380 0.63 -1.0
5,125,101 + AO353_23380 0.63 -1.4
5,125,101 + AO353_23380 0.63 +1.5
5,125,101 + AO353_23380 0.63 -0.8
5,125,101 + AO353_23380 0.63 +0.9
5,125,102 - AO353_23380 0.64 -2.4
5,125,102 - AO353_23380 0.64 -0.6
5,125,102 - AO353_23380 0.64 +2.6
5,125,102 - AO353_23380 0.64 +0.2
5,125,102 - AO353_23380 0.64 +1.2
5,125,102 - AO353_23380 0.64 +1.9
5,125,102 - AO353_23380 0.64 -2.0
5,125,102 - AO353_23380 0.64 +2.2
5,125,102 - AO353_23380 0.64 -1.2
5,125,102 - AO353_23380 0.64 -2.4
5,125,102 - AO353_23380 0.64 +1.7
5,125,102 - AO353_23380 0.64 -1.0
5,125,102 - AO353_23380 0.64 +0.6
5,125,131 + AO353_23380 0.66 -1.4
5,125,131 + AO353_23380 0.66 +0.9
5,125,194 + AO353_23380 0.71 -2.0
5,125,194 + AO353_23380 0.71 -1.0
5,125,194 + -0.4
5,125,194 + AO353_23380 0.71 +2.1
5,125,195 - AO353_23380 0.71 +1.2
5,125,195 - AO353_23380 0.71 -0.4
5,125,195 - AO353_23380 0.71 +0.6
5,125,195 - AO353_23380 0.71 +1.8
5,125,195 - AO353_23380 0.71 +0.0
5,125,198 + AO353_23380 0.71 -2.4
5,125,198 + AO353_23380 0.71 -2.7
5,125,198 + AO353_23380 0.71 -0.4
5,125,198 + AO353_23380 0.71 +0.3
5,125,198 + AO353_23380 0.71 -0.4
5,125,199 - AO353_23380 0.71 +0.4
5,125,199 - AO353_23380 0.71 +0.6
5,125,199 - AO353_23380 0.71 -2.4
5,125,199 - AO353_23380 0.71 -1.0
5,125,199 - AO353_23380 0.71 -0.7
5,125,199 - AO353_23380 0.71 +1.4
5,125,199 - AO353_23380 0.71 -2.4
5,125,335 + AO353_23380 0.81 -2.0
5,125,336 - AO353_23380 0.81 +0.2
5,125,336 - AO353_23380 0.81 +1.0
5,125,411 + AO353_23380 0.87 +2.6
5,125,411 + AO353_23380 0.87 -2.4
5,125,411 + AO353_23380 0.87 +0.6
5,125,411 + AO353_23380 0.87 -2.7
5,125,411 + AO353_23380 0.87 -0.2
5,125,412 - AO353_23380 0.87 +1.2
5,125,412 - AO353_23380 0.87 -1.7
5,125,412 - AO353_23380 0.87 +1.9
5,125,412 - AO353_23380 0.87 +1.0
5,125,596 + -1.4
5,125,596 + -0.8
5,125,596 + +1.7
5,125,596 + -3.4
5,125,596 + +1.9
5,125,596 + -0.4
5,125,596 + -0.4
5,125,596 + -0.4
5,125,596 + +1.0
5,125,596 + -2.4
5,125,597 - +2.2
5,125,597 - -0.6
5,125,597 - -0.8
5,125,597 - +1.2
5,125,597 - -2.0
5,125,597 - -0.4
5,125,597 - +0.2
5,125,597 - -1.4
5,125,674 - +0.2
5,125,674 - -0.4
5,125,685 + -0.7
5,125,728 + +0.6
5,125,729 - -1.4
5,125,729 - +0.9
5,125,788 + -1.4
5,125,788 + -1.4
5,125,788 + -0.4
5,125,870 + -0.7
5,125,879 + -2.0
5,125,879 + -1.4
5,125,879 + +0.8
5,125,880 - -2.0
5,125,880 - -0.1
5,125,880 - +0.0
5,125,889 - -2.4
5,125,919 + -0.4
5,125,919 + -1.4
5,125,919 + +0.0
5,125,919 + +0.6
5,125,920 - -0.6
5,125,920 - -2.4
5,125,920 - -1.1
5,125,920 - -2.0
5,125,920 - -0.4
5,125,923 + -0.4
5,125,923 + -0.7
5,125,923 + -0.1
5,125,923 + -1.2
5,125,923 + -1.4
5,125,924 - -2.4
5,125,924 - -0.4
5,125,924 - -2.0
5,125,924 - -2.0
5,126,011 + -0.9
5,126,189 - AO353_23385 0.22 -3.7
5,126,189 - AO353_23385 0.22 -2.0
5,126,189 - AO353_23385 0.22 -1.4
5,126,234 - AO353_23385 0.26 -1.4
5,126,380 + AO353_23385 0.38 -1.4
5,126,380 + AO353_23385 0.38 -0.4
5,126,497 - AO353_23385 0.48 -0.4
5,126,596 + AO353_23385 0.56 -0.7
5,126,626 + AO353_23385 0.59 -2.4
5,126,626 + AO353_23385 0.59 -0.8
5,126,627 - AO353_23385 0.59 -1.0
5,126,782 + AO353_23385 0.72 -1.4
5,126,782 + AO353_23385 0.72 -0.4
5,126,782 + AO353_23385 0.72 -1.4
5,126,783 - AO353_23385 0.72 -0.4
5,126,783 - AO353_23385 0.72 +0.2
5,126,783 - AO353_23385 0.72 -3.1
5,126,849 - AO353_23385 0.77 -1.4
5,126,857 + AO353_23385 0.78 -3.2
5,126,858 - AO353_23385 0.78 -0.4
5,126,920 + AO353_23385 0.83 +2.8
5,126,920 + AO353_23385 0.83 -1.3
5,126,921 - AO353_23385 0.83 -1.4
5,126,921 - AO353_23385 0.83 -3.4
5,126,960 + AO353_23385 0.87 -0.4
5,126,960 + AO353_23385 0.87 -0.4
5,126,961 - AO353_23385 0.87 -0.4
5,126,961 - AO353_23385 0.87 +0.6
5,127,016 + -0.4
5,127,016 + -0.4
5,127,017 - -0.4
5,127,068 - +0.8
5,127,118 + -0.4
5,127,118 + -1.4
5,127,118 + -1.4
5,127,118 + +2.9
5,127,119 - -0.4
5,127,119 - -3.6
5,127,119 - +0.2
5,127,119 - -2.0
5,127,602 - AO353_23390 0.63 -0.4
5,127,644 - AO353_23390 0.70 +0.7
5,127,780 - +1.8
5,127,925 + +0.3
5,127,925 + +1.9
5,127,925 + -1.4
5,127,926 - -2.4
5,127,926 - +1.4
5,127,926 - +0.6
5,127,928 - AO353_23395 0.10 +0.7
5,127,928 - AO353_23395 0.10 -2.0
5,127,969 - AO353_23395 0.17 +0.2

Or see this region's nucleotide sequence