Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23185

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23180 and AO353_23185 are separated by 39 nucleotidesAO353_23185 and AO353_23190 are separated by 350 nucleotides AO353_23180: AO353_23180 - nitrate ABC transporter substrate-binding protein, at 5,085,258 to 5,086,259 _23180 AO353_23185: AO353_23185 - ABC transporter ATP-binding protein, at 5,086,299 to 5,087,135 _23185 AO353_23190: AO353_23190 - LacI family transcriptional regulator, at 5,087,486 to 5,088,544 _23190 Position (kb) 5086 5087 5088Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5085.299 kb on - strandat 5085.299 kb on - strandat 5085.346 kb on + strandat 5085.346 kb on + strandat 5085.347 kb on - strandat 5085.409 kb on + strand, within AO353_23180at 5085.409 kb on + strand, within AO353_23180at 5085.410 kb on - strand, within AO353_23180at 5085.410 kb on - strand, within AO353_23180at 5085.410 kb on - strand, within AO353_23180at 5085.424 kb on + strand, within AO353_23180at 5085.424 kb on + strand, within AO353_23180at 5085.467 kb on - strand, within AO353_23180at 5085.799 kb on - strand, within AO353_23180at 5085.817 kb on + strand, within AO353_23180at 5085.817 kb on + strand, within AO353_23180at 5085.817 kb on + strand, within AO353_23180at 5085.818 kb on - strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.820 kb on + strand, within AO353_23180at 5085.821 kb on - strand, within AO353_23180at 5085.821 kb on - strand, within AO353_23180at 5085.821 kb on - strand, within AO353_23180at 5085.821 kb on - strand, within AO353_23180at 5085.821 kb on - strand, within AO353_23180at 5085.821 kb on - strand, within AO353_23180at 5086.090 kb on + strand, within AO353_23180at 5086.159 kb on + strandat 5086.159 kb on + strandat 5086.159 kb on + strandat 5086.159 kb on + strandat 5086.159 kb on + strandat 5086.159 kb on + strandat 5086.159 kb on + strandat 5086.160 kb on - strandat 5086.160 kb on - strandat 5086.160 kb on - strandat 5086.160 kb on - strandat 5086.160 kb on - strandat 5086.160 kb on - strandat 5086.263 kb on + strandat 5086.264 kb on - strandat 5086.264 kb on - strandat 5086.264 kb on - strandat 5086.264 kb on - strandat 5087.108 kb on + strandat 5087.131 kb on + strandat 5087.131 kb on + strandat 5087.132 kb on - strandat 5087.132 kb on - strandat 5087.174 kb on + strandat 5087.175 kb on - strandat 5087.176 kb on + strandat 5087.176 kb on + strandat 5087.183 kb on + strandat 5087.183 kb on + strandat 5087.184 kb on - strandat 5087.184 kb on - strandat 5087.184 kb on - strandat 5087.295 kb on - strandat 5087.296 kb on + strandat 5087.298 kb on + strandat 5087.313 kb on + strandat 5087.313 kb on + strandat 5087.315 kb on + strandat 5087.377 kb on + strandat 5087.377 kb on + strandat 5087.378 kb on - strandat 5087.379 kb on + strandat 5087.379 kb on + strandat 5087.379 kb on + strandat 5087.380 kb on - strandat 5087.421 kb on + strandat 5087.421 kb on + strandat 5087.421 kb on + strandat 5087.678 kb on + strand, within AO353_23190at 5087.678 kb on + strand, within AO353_23190at 5087.678 kb on + strand, within AO353_23190at 5087.679 kb on - strandat 5087.679 kb on - strand, within AO353_23190at 5087.760 kb on + strand, within AO353_23190at 5087.760 kb on + strand, within AO353_23190at 5087.761 kb on - strand, within AO353_23190at 5087.761 kb on - strand, within AO353_23190at 5087.761 kb on - strand, within AO353_23190at 5087.852 kb on + strand, within AO353_23190at 5087.852 kb on + strand, within AO353_23190at 5087.852 kb on + strand, within AO353_23190at 5087.853 kb on - strandat 5087.853 kb on - strand, within AO353_23190at 5087.853 kb on - strand, within AO353_23190at 5088.027 kb on + strand, within AO353_23190at 5088.027 kb on + strand, within AO353_23190at 5088.027 kb on + strand, within AO353_23190at 5088.028 kb on - strand, within AO353_23190at 5088.028 kb on - strand, within AO353_23190at 5088.028 kb on - strandat 5088.028 kb on - strand, within AO353_23190at 5088.028 kb on - strand, within AO353_23190at 5088.028 kb on - strand, within AO353_23190at 5088.028 kb on - strand, within AO353_23190at 5088.028 kb on - strand, within AO353_23190at 5088.028 kb on - strand, within AO353_23190

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,085,299 - -1.4
5,085,299 - -0.4
5,085,346 + -0.4
5,085,346 + +1.2
5,085,347 - +2.9
5,085,409 + AO353_23180 0.15 -0.4
5,085,409 + AO353_23180 0.15 +1.3
5,085,410 - AO353_23180 0.15 -0.4
5,085,410 - AO353_23180 0.15 -3.2
5,085,410 - AO353_23180 0.15 +1.9
5,085,424 + AO353_23180 0.17 +2.0
5,085,424 + AO353_23180 0.17 +1.3
5,085,467 - AO353_23180 0.21 -1.4
5,085,799 - AO353_23180 0.54 +0.9
5,085,817 + AO353_23180 0.56 -0.9
5,085,817 + AO353_23180 0.56 -0.4
5,085,817 + AO353_23180 0.56 +1.4
5,085,818 - AO353_23180 0.56 +1.2
5,085,820 + AO353_23180 0.56 -1.0
5,085,820 + AO353_23180 0.56 +1.2
5,085,820 + AO353_23180 0.56 -0.4
5,085,820 + AO353_23180 0.56 +1.9
5,085,820 + AO353_23180 0.56 +0.6
5,085,820 + AO353_23180 0.56 -0.4
5,085,820 + AO353_23180 0.56 +0.6
5,085,820 + AO353_23180 0.56 -0.6
5,085,821 - AO353_23180 0.56 +0.8
5,085,821 - AO353_23180 0.56 +3.1
5,085,821 - AO353_23180 0.56 -1.4
5,085,821 - AO353_23180 0.56 -2.0
5,085,821 - AO353_23180 0.56 -1.4
5,085,821 - AO353_23180 0.56 +0.2
5,086,090 + AO353_23180 0.83 -0.4
5,086,159 + -0.4
5,086,159 + -1.4
5,086,159 + -1.4
5,086,159 + -2.0
5,086,159 + +0.2
5,086,159 + +1.6
5,086,159 + +1.5
5,086,160 - +0.9
5,086,160 - +0.5
5,086,160 - -0.4
5,086,160 - +1.5
5,086,160 - +2.8
5,086,160 - -0.4
5,086,263 + -2.4
5,086,264 - -0.4
5,086,264 - -2.0
5,086,264 - -2.4
5,086,264 - +0.6
5,087,108 + -2.7
5,087,131 + +2.2
5,087,131 + -2.0
5,087,132 - -2.7
5,087,132 - +0.2
5,087,174 + -1.4
5,087,175 - -0.4
5,087,176 + +1.5
5,087,176 + -1.7
5,087,183 + -1.4
5,087,183 + -2.0
5,087,184 - +2.2
5,087,184 - +3.1
5,087,184 - -0.4
5,087,295 - +1.6
5,087,296 + +0.3
5,087,298 + -0.4
5,087,313 + -2.4
5,087,313 + +1.5
5,087,315 + +0.3
5,087,377 + +0.2
5,087,377 + -1.4
5,087,378 - +0.8
5,087,379 + -0.4
5,087,379 + -0.4
5,087,379 + +0.6
5,087,380 - +0.1
5,087,421 + +0.6
5,087,421 + +2.8
5,087,421 + -0.7
5,087,678 + AO353_23190 0.18 -0.7
5,087,678 + AO353_23190 0.18 -2.7
5,087,678 + AO353_23190 0.18 -2.4
5,087,679 - -0.4
5,087,679 - AO353_23190 0.18 -2.0
5,087,760 + AO353_23190 0.26 -2.0
5,087,760 + AO353_23190 0.26 -1.0
5,087,761 - AO353_23190 0.26 -2.0
5,087,761 - AO353_23190 0.26 -0.4
5,087,761 - AO353_23190 0.26 -2.7
5,087,852 + AO353_23190 0.35 -1.0
5,087,852 + AO353_23190 0.35 +0.7
5,087,852 + AO353_23190 0.35 -3.5
5,087,853 - +0.9
5,087,853 - AO353_23190 0.35 +0.4
5,087,853 - AO353_23190 0.35 -2.0
5,088,027 + AO353_23190 0.51 +1.5
5,088,027 + AO353_23190 0.51 -0.0
5,088,027 + AO353_23190 0.51 +0.6
5,088,028 - AO353_23190 0.51 +1.4
5,088,028 - AO353_23190 0.51 -2.0
5,088,028 - -2.0
5,088,028 - AO353_23190 0.51 +1.9
5,088,028 - AO353_23190 0.51 -2.0
5,088,028 - AO353_23190 0.51 -1.4
5,088,028 - AO353_23190 0.51 -0.0
5,088,028 - AO353_23190 0.51 -0.6
5,088,028 - AO353_23190 0.51 -1.4

Or see this region's nucleotide sequence