Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22205

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22195 and AO353_22200 are separated by 37 nucleotidesAO353_22200 and AO353_22205 are separated by 102 nucleotidesAO353_22205 and AO353_22210 are separated by 12 nucleotides AO353_22195: AO353_22195 - metal ABC transporter permease, at 4,860,719 to 4,861,390 _22195 AO353_22200: AO353_22200 - metal-binding protein, at 4,861,428 to 4,861,889 _22200 AO353_22205: AO353_22205 - copper resistance protein CopB, at 4,861,992 to 4,862,927 _22205 AO353_22210: AO353_22210 - copper oxidase, at 4,862,940 to 4,864,790 _22210 Position (kb) 4861 4862 4863Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4861.120 kb on + strand, within AO353_22195at 4861.120 kb on + strand, within AO353_22195at 4861.121 kb on - strand, within AO353_22195at 4861.442 kb on - strandat 4861.472 kb on + strandat 4861.492 kb on + strand, within AO353_22200at 4861.590 kb on + strand, within AO353_22200at 4861.590 kb on + strand, within AO353_22200at 4861.590 kb on + strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.605 kb on + strand, within AO353_22200at 4861.605 kb on + strand, within AO353_22200at 4861.861 kb on - strandat 4861.861 kb on - strandat 4861.861 kb on - strandat 4861.894 kb on - strandat 4861.964 kb on + strandat 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.305 kb on + strand, within AO353_22205at 4862.305 kb on + strandat 4862.305 kb on + strand, within AO353_22205at 4862.305 kb on + strand, within AO353_22205at 4862.305 kb on + strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.352 kb on - strand, within AO353_22205at 4862.400 kb on + strand, within AO353_22205at 4862.591 kb on + strand, within AO353_22205at 4862.591 kb on + strand, within AO353_22205at 4862.592 kb on - strand, within AO353_22205at 4862.682 kb on + strand, within AO353_22205at 4862.697 kb on - strand, within AO353_22205at 4862.727 kb on - strand, within AO353_22205at 4862.727 kb on - strand, within AO353_22205at 4862.878 kb on - strandat 4862.941 kb on + strandat 4862.941 kb on + strandat 4862.955 kb on + strandat 4862.955 kb on + strandat 4863.005 kb on - strandat 4863.193 kb on + strand, within AO353_22210at 4863.193 kb on + strand, within AO353_22210at 4863.193 kb on + strand, within AO353_22210at 4863.194 kb on - strand, within AO353_22210at 4863.323 kb on + strand, within AO353_22210at 4863.323 kb on + strand, within AO353_22210at 4863.324 kb on - strand, within AO353_22210at 4863.340 kb on + strand, within AO353_22210at 4863.340 kb on + strand, within AO353_22210at 4863.369 kb on + strand, within AO353_22210at 4863.370 kb on - strandat 4863.370 kb on - strand, within AO353_22210at 4863.370 kb on - strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.494 kb on + strand, within AO353_22210at 4863.495 kb on - strand, within AO353_22210at 4863.599 kb on + strandat 4863.599 kb on + strand, within AO353_22210at 4863.599 kb on + strand, within AO353_22210at 4863.599 kb on + strand, within AO353_22210at 4863.599 kb on + strand, within AO353_22210at 4863.600 kb on - strand, within AO353_22210at 4863.600 kb on - strand, within AO353_22210at 4863.600 kb on - strand, within AO353_22210at 4863.600 kb on - strand, within AO353_22210at 4863.600 kb on - strand, within AO353_22210at 4863.805 kb on + strand, within AO353_22210at 4863.805 kb on + strand, within AO353_22210at 4863.805 kb on + strand, within AO353_22210at 4863.805 kb on + strand, within AO353_22210at 4863.805 kb on + strand, within AO353_22210at 4863.806 kb on - strand, within AO353_22210at 4863.806 kb on - strand, within AO353_22210at 4863.806 kb on - strand, within AO353_22210at 4863.841 kb on + strand, within AO353_22210at 4863.841 kb on + strand, within AO353_22210at 4863.841 kb on + strand, within AO353_22210at 4863.841 kb on + strand, within AO353_22210at 4863.842 kb on - strand, within AO353_22210at 4863.842 kb on - strand, within AO353_22210at 4863.842 kb on - strand, within AO353_22210at 4863.842 kb on - strand, within AO353_22210

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,861,120 + AO353_22195 0.60 -1.9
4,861,120 + AO353_22195 0.60 -0.9
4,861,121 - AO353_22195 0.60 +1.7
4,861,442 - -0.3
4,861,472 + -1.3
4,861,492 + AO353_22200 0.14 +0.8
4,861,590 + AO353_22200 0.35 +0.2
4,861,590 + AO353_22200 0.35 -1.9
4,861,590 + AO353_22200 0.35 +1.6
4,861,591 - AO353_22200 0.35 +2.1
4,861,591 - AO353_22200 0.35 +3.0
4,861,591 - AO353_22200 0.35 -0.6
4,861,591 - AO353_22200 0.35 +3.2
4,861,605 + AO353_22200 0.38 -3.3
4,861,605 + AO353_22200 0.38 -0.6
4,861,861 - +1.3
4,861,861 - -0.7
4,861,861 - -0.3
4,861,894 - -2.3
4,861,964 + +2.1
4,862,104 + AO353_22205 0.12 +0.3
4,862,104 + AO353_22205 0.12 +0.4
4,862,104 + AO353_22205 0.12 -1.5
4,862,104 + AO353_22205 0.12 -1.3
4,862,104 + AO353_22205 0.12 -1.9
4,862,104 + AO353_22205 0.12 +0.6
4,862,105 - AO353_22205 0.12 -1.3
4,862,105 - AO353_22205 0.12 -1.9
4,862,105 - AO353_22205 0.12 -1.3
4,862,105 - AO353_22205 0.12 -0.3
4,862,105 - AO353_22205 0.12 +2.0
4,862,105 - AO353_22205 0.12 -2.3
4,862,305 + AO353_22205 0.33 +0.4
4,862,305 + -0.3
4,862,305 + AO353_22205 0.33 -1.9
4,862,305 + AO353_22205 0.33 +1.1
4,862,305 + AO353_22205 0.33 -1.5
4,862,306 - AO353_22205 0.34 -1.9
4,862,306 - AO353_22205 0.34 +0.4
4,862,306 - AO353_22205 0.34 +1.4
4,862,306 - AO353_22205 0.34 -0.7
4,862,306 - AO353_22205 0.34 -1.9
4,862,306 - AO353_22205 0.34 -0.3
4,862,306 - AO353_22205 0.34 -0.6
4,862,306 - AO353_22205 0.34 -0.3
4,862,306 - AO353_22205 0.34 -2.9
4,862,332 + AO353_22205 0.36 +2.0
4,862,332 + AO353_22205 0.36 -3.3
4,862,332 + AO353_22205 0.36 -2.3
4,862,332 + AO353_22205 0.36 -0.3
4,862,333 - AO353_22205 0.36 -0.3
4,862,333 - AO353_22205 0.36 -2.6
4,862,333 - AO353_22205 0.36 +0.3
4,862,333 - AO353_22205 0.36 +4.0
4,862,352 - AO353_22205 0.38 -0.3
4,862,400 + AO353_22205 0.44 -1.3
4,862,591 + AO353_22205 0.64 -2.3
4,862,591 + AO353_22205 0.64 +0.3
4,862,592 - AO353_22205 0.64 +0.3
4,862,682 + AO353_22205 0.74 -1.3
4,862,697 - AO353_22205 0.75 +1.7
4,862,727 - AO353_22205 0.79 -1.6
4,862,727 - AO353_22205 0.79 -0.3
4,862,878 - +3.3
4,862,941 + +1.3
4,862,941 + -1.3
4,862,955 + -1.3
4,862,955 + -0.6
4,863,005 - +0.5
4,863,193 + AO353_22210 0.14 +2.3
4,863,193 + AO353_22210 0.14 -0.5
4,863,193 + AO353_22210 0.14 -2.3
4,863,194 - AO353_22210 0.14 -1.0
4,863,323 + AO353_22210 0.21 -0.3
4,863,323 + AO353_22210 0.21 -0.3
4,863,324 - AO353_22210 0.21 +1.1
4,863,340 + AO353_22210 0.22 -0.0
4,863,340 + AO353_22210 0.22 +1.3
4,863,369 + AO353_22210 0.23 -2.3
4,863,370 - -0.3
4,863,370 - AO353_22210 0.23 -2.6
4,863,370 - AO353_22210 0.23 -0.5
4,863,494 + AO353_22210 0.30 +1.3
4,863,494 + AO353_22210 0.30 -1.3
4,863,494 + AO353_22210 0.30 -0.3
4,863,494 + AO353_22210 0.30 -0.3
4,863,494 + AO353_22210 0.30 +0.9
4,863,494 + AO353_22210 0.30 +0.5
4,863,494 + AO353_22210 0.30 +0.3
4,863,494 + AO353_22210 0.30 -0.7
4,863,495 - AO353_22210 0.30 +1.3
4,863,599 + +1.7
4,863,599 + AO353_22210 0.36 -0.3
4,863,599 + AO353_22210 0.36 +0.7
4,863,599 + AO353_22210 0.36 -1.9
4,863,599 + AO353_22210 0.36 -1.9
4,863,600 - AO353_22210 0.36 +0.9
4,863,600 - AO353_22210 0.36 +3.3
4,863,600 - AO353_22210 0.36 +1.3
4,863,600 - AO353_22210 0.36 +1.1
4,863,600 - AO353_22210 0.36 -1.9
4,863,805 + AO353_22210 0.47 -1.9
4,863,805 + AO353_22210 0.47 -0.3
4,863,805 + AO353_22210 0.47 -2.3
4,863,805 + AO353_22210 0.47 -0.3
4,863,805 + AO353_22210 0.47 -0.3
4,863,806 - AO353_22210 0.47 -0.3
4,863,806 - AO353_22210 0.47 +0.3
4,863,806 - AO353_22210 0.47 -1.3
4,863,841 + AO353_22210 0.49 +0.1
4,863,841 + AO353_22210 0.49 -1.9
4,863,841 + AO353_22210 0.49 -0.6
4,863,841 + AO353_22210 0.49 -0.9
4,863,842 - AO353_22210 0.49 -2.9
4,863,842 - AO353_22210 0.49 +0.4
4,863,842 - AO353_22210 0.49 -1.3
4,863,842 - AO353_22210 0.49 -2.3

Or see this region's nucleotide sequence