Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22105 and AO353_22110 overlap by 8 nucleotides AO353_22110 and AO353_22115 are separated by 10 nucleotides AO353_22115 and AO353_22120 are separated by 25 nucleotides
AO353_22105: AO353_22105 - nitrate reductase, at 4,843,898 to 4,844,653
_22105
AO353_22110: AO353_22110 - nitrate reductase, at 4,844,646 to 4,845,326
_22110
AO353_22115: AO353_22115 - peptidylprolyl isomerase, at 4,845,337 to 4,846,296
_22115
AO353_22120: AO353_22120 - cyclic pyranopterin phosphate synthase MoaA, at 4,846,322 to 4,847,314
_22120
Position (kb)
4845
4846
4847 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4844.358 kb on - strand, within AO353_22105 at 4844.640 kb on + strand at 4844.640 kb on + strand at 4844.641 kb on - strand at 4844.651 kb on + strand at 4844.651 kb on + strand at 4844.651 kb on + strand at 4844.652 kb on - strand at 4844.652 kb on - strand at 4844.679 kb on + strand at 4844.679 kb on + strand at 4844.679 kb on + strand at 4844.680 kb on - strand at 4844.680 kb on - strand at 4844.680 kb on - strand at 4844.680 kb on - strand at 4844.680 kb on - strand at 4844.680 kb on - strand at 4844.685 kb on + strand at 4844.685 kb on + strand at 4844.685 kb on + strand at 4844.685 kb on + strand at 4844.685 kb on + strand at 4844.685 kb on + strand at 4844.686 kb on - strand at 4844.686 kb on - strand at 4844.686 kb on - strand at 4844.686 kb on - strand at 4844.686 kb on - strand at 4844.699 kb on + strand at 4844.700 kb on - strand at 4844.743 kb on - strand, within AO353_22110 at 4844.743 kb on - strand, within AO353_22110 at 4844.743 kb on - strand, within AO353_22110 at 4844.743 kb on - strand, within AO353_22110 at 4844.875 kb on - strand, within AO353_22110 at 4844.960 kb on - strand, within AO353_22110 at 4844.960 kb on - strand, within AO353_22110 at 4845.198 kb on + strand, within AO353_22110 at 4845.198 kb on + strand, within AO353_22110 at 4845.198 kb on + strand, within AO353_22110 at 4845.199 kb on - strand, within AO353_22110 at 4845.199 kb on - strand, within AO353_22110 at 4845.199 kb on - strand, within AO353_22110 at 4845.199 kb on - strand, within AO353_22110 at 4845.199 kb on - strand, within AO353_22110 at 4845.259 kb on + strand at 4845.259 kb on + strand at 4845.259 kb on + strand at 4845.259 kb on + strand at 4845.260 kb on - strand at 4845.260 kb on - strand at 4845.285 kb on + strand at 4845.285 kb on + strand at 4845.285 kb on + strand at 4845.285 kb on + strand at 4845.286 kb on - strand at 4845.583 kb on + strand, within AO353_22115 at 4845.584 kb on - strand, within AO353_22115 at 4845.584 kb on - strand, within AO353_22115 at 4845.787 kb on + strand at 4845.790 kb on + strand, within AO353_22115 at 4845.964 kb on + strand, within AO353_22115 at 4846.028 kb on + strand, within AO353_22115 at 4846.029 kb on - strand, within AO353_22115 at 4846.029 kb on - strand, within AO353_22115 at 4846.078 kb on - strand, within AO353_22115 at 4846.078 kb on - strand, within AO353_22115 at 4846.220 kb on - strand at 4846.220 kb on - strand at 4846.365 kb on - strand at 4846.365 kb on - strand at 4846.409 kb on + strand at 4846.409 kb on + strand at 4846.409 kb on + strand at 4846.410 kb on - strand at 4846.854 kb on - strand, within AO353_22120 at 4846.854 kb on - strand, within AO353_22120 at 4847.021 kb on + strand, within AO353_22120 at 4847.021 kb on + strand, within AO353_22120 at 4847.022 kb on - strand, within AO353_22120 at 4847.022 kb on - strand, within AO353_22120 at 4847.022 kb on - strand, within AO353_22120 at 4847.022 kb on - strand, within AO353_22120 at 4847.166 kb on + strand, within AO353_22120 at 4847.166 kb on + strand, within AO353_22120 at 4847.167 kb on - strand, within AO353_22120 at 4847.175 kb on + strand, within AO353_22120 at 4847.176 kb on - strand, within AO353_22120
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,844,358 - AO353_22105 0.61 +1.7 4,844,640 + +3.2 4,844,640 + -1.3 4,844,641 - +1.7 4,844,651 + -1.3 4,844,651 + +0.9 4,844,651 + -2.6 4,844,652 - -0.3 4,844,652 - +0.3 4,844,679 + -0.3 4,844,679 + -1.9 4,844,679 + +0.4 4,844,680 - -1.3 4,844,680 - -1.3 4,844,680 - -0.3 4,844,680 - +4.4 4,844,680 - -1.9 4,844,680 - -0.3 4,844,685 + -3.5 4,844,685 + -2.3 4,844,685 + +0.7 4,844,685 + +0.3 4,844,685 + -0.3 4,844,685 + -1.3 4,844,686 - -2.3 4,844,686 - -0.3 4,844,686 - -0.3 4,844,686 - +1.0 4,844,686 - +1.6 4,844,699 + +1.8 4,844,700 - -0.3 4,844,743 - AO353_22110 0.14 +0.0 4,844,743 - AO353_22110 0.14 +1.3 4,844,743 - AO353_22110 0.14 -0.3 4,844,743 - AO353_22110 0.14 +0.3 4,844,875 - AO353_22110 0.34 -2.3 4,844,960 - AO353_22110 0.46 +0.5 4,844,960 - AO353_22110 0.46 +0.2 4,845,198 + AO353_22110 0.81 +3.6 4,845,198 + AO353_22110 0.81 -1.3 4,845,198 + AO353_22110 0.81 -2.3 4,845,199 - AO353_22110 0.81 -1.9 4,845,199 - AO353_22110 0.81 +0.3 4,845,199 - AO353_22110 0.81 +1.0 4,845,199 - AO353_22110 0.81 +0.4 4,845,199 - AO353_22110 0.81 +0.7 4,845,259 + -1.9 4,845,259 + -2.3 4,845,259 + +0.6 4,845,259 + -0.3 4,845,260 - +1.3 4,845,260 - -1.0 4,845,285 + -0.1 4,845,285 + -2.3 4,845,285 + +0.3 4,845,285 + -0.7 4,845,286 - +0.1 4,845,583 + AO353_22115 0.26 -1.9 4,845,584 - AO353_22115 0.26 -1.9 4,845,584 - AO353_22115 0.26 +0.7 4,845,787 + -0.3 4,845,790 + AO353_22115 0.47 +0.5 4,845,964 + AO353_22115 0.65 +0.3 4,846,028 + AO353_22115 0.72 -1.3 4,846,029 - AO353_22115 0.72 -1.9 4,846,029 - AO353_22115 0.72 +1.5 4,846,078 - AO353_22115 0.77 -1.3 4,846,078 - AO353_22115 0.77 -1.3 4,846,220 - -1.9 4,846,220 - +1.3 4,846,365 - -0.3 4,846,365 - +2.7 4,846,409 + -0.6 4,846,409 + -3.3 4,846,409 + -0.6 4,846,410 - +0.4 4,846,854 - AO353_22120 0.54 +0.7 4,846,854 - AO353_22120 0.54 -1.9 4,847,021 + AO353_22120 0.70 +1.3 4,847,021 + AO353_22120 0.70 -0.0 4,847,022 - AO353_22120 0.70 -1.9 4,847,022 - AO353_22120 0.70 +0.7 4,847,022 - AO353_22120 0.70 -0.3 4,847,022 - AO353_22120 0.70 -1.9 4,847,166 + AO353_22120 0.85 +1.3 4,847,166 + AO353_22120 0.85 -2.6 4,847,167 - AO353_22120 0.85 +2.6 4,847,175 + AO353_22120 0.86 -2.3 4,847,176 - AO353_22120 0.86 +0.2
Or see this region's nucleotide sequence