Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22040

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22030 and AO353_22035 are separated by 88 nucleotidesAO353_22035 and AO353_22040 are separated by 100 nucleotidesAO353_22040 and AO353_22045 overlap by 4 nucleotides AO353_22030: AO353_22030 - transcriptional regulator, at 4,824,379 to 4,825,908 _22030 AO353_22035: AO353_22035 - pyridoxine 5'-phosphate oxidase, at 4,825,997 to 4,826,644 _22035 AO353_22040: AO353_22040 - molybdenum cofactor biosynthesis protein B, at 4,826,745 to 4,827,299 _22040 AO353_22045: AO353_22045 - molybdenum cofactor biosynthesis protein MoaA, at 4,827,296 to 4,828,531 _22045 Position (kb) 4826 4827 4828Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4825.902 kb on + strandat 4825.902 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4826.027 kb on - strandat 4826.030 kb on + strandat 4826.030 kb on + strandat 4826.030 kb on + strandat 4826.030 kb on + strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.047 kb on - strandat 4826.140 kb on + strand, within AO353_22035at 4826.141 kb on - strand, within AO353_22035at 4826.141 kb on - strand, within AO353_22035at 4826.225 kb on - strand, within AO353_22035at 4826.240 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.372 kb on + strand, within AO353_22035at 4826.372 kb on + strand, within AO353_22035at 4826.373 kb on - strand, within AO353_22035at 4826.650 kb on + strandat 4826.650 kb on + strandat 4826.650 kb on + strandat 4826.650 kb on + strandat 4826.651 kb on - strandat 4826.667 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.684 kb on - strandat 4826.684 kb on - strandat 4826.728 kb on + strandat 4826.728 kb on + strandat 4826.728 kb on + strandat 4826.807 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.910 kb on + strand, within AO353_22040at 4826.910 kb on + strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.929 kb on + strand, within AO353_22040at 4826.929 kb on + strand, within AO353_22040at 4826.930 kb on - strand, within AO353_22040at 4826.965 kb on + strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4827.005 kb on + strand, within AO353_22040at 4827.006 kb on - strand, within AO353_22040at 4827.488 kb on + strand, within AO353_22045at 4827.718 kb on + strand, within AO353_22045at 4827.718 kb on + strand, within AO353_22045at 4827.719 kb on - strand, within AO353_22045at 4827.754 kb on - strand, within AO353_22045at 4827.813 kb on + strand, within AO353_22045at 4827.911 kb on + strand, within AO353_22045at 4827.911 kb on + strand, within AO353_22045at 4827.911 kb on + strand, within AO353_22045at 4827.912 kb on - strand, within AO353_22045at 4827.912 kb on - strand, within AO353_22045at 4827.912 kb on - strand, within AO353_22045at 4827.974 kb on + strand, within AO353_22045at 4827.974 kb on + strand, within AO353_22045at 4827.975 kb on - strand, within AO353_22045at 4828.071 kb on + strand, within AO353_22045at 4828.072 kb on - strand, within AO353_22045

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,825,902 + -0.3
4,825,902 + -1.3
4,825,906 + +1.3
4,825,906 + -1.3
4,825,906 + -1.3
4,825,906 + +2.0
4,825,906 + -2.6
4,825,906 + +0.3
4,825,906 + -2.6
4,825,906 + +0.9
4,825,907 - +0.7
4,825,907 - -0.3
4,825,907 - +1.7
4,825,907 - +0.3
4,825,907 - -0.6
4,825,907 - -2.9
4,826,027 - +1.9
4,826,030 + -2.9
4,826,030 + -0.7
4,826,030 + +0.9
4,826,030 + -1.3
4,826,031 - +0.3
4,826,031 - -1.9
4,826,031 - +0.4
4,826,031 - -0.3
4,826,031 - -0.3
4,826,031 - +2.4
4,826,047 - +0.7
4,826,140 + AO353_22035 0.22 -1.3
4,826,141 - AO353_22035 0.22 +0.7
4,826,141 - AO353_22035 0.22 -1.9
4,826,225 - AO353_22035 0.35 -1.3
4,826,240 + AO353_22035 0.38 -2.6
4,826,326 + AO353_22035 0.51 -3.1
4,826,326 + AO353_22035 0.51 -0.7
4,826,326 + AO353_22035 0.51 -0.9
4,826,326 + AO353_22035 0.51 -0.3
4,826,326 + AO353_22035 0.51 -2.6
4,826,372 + AO353_22035 0.58 -0.3
4,826,372 + AO353_22035 0.58 -0.3
4,826,373 - AO353_22035 0.58 -1.3
4,826,650 + +0.9
4,826,650 + -1.3
4,826,650 + -2.6
4,826,650 + -1.6
4,826,651 - +0.3
4,826,667 + +0.7
4,826,683 + -1.9
4,826,683 + -1.9
4,826,683 + -0.3
4,826,683 + +0.1
4,826,683 + -0.3
4,826,684 - +0.6
4,826,684 - -0.7
4,826,728 + -0.9
4,826,728 + +2.1
4,826,728 + -1.3
4,826,807 + AO353_22040 0.11 -0.9
4,826,906 + AO353_22040 0.29 +2.1
4,826,906 + AO353_22040 0.29 -0.3
4,826,906 + AO353_22040 0.29 +0.3
4,826,906 + AO353_22040 0.29 +0.0
4,826,906 + AO353_22040 0.29 +3.0
4,826,906 + AO353_22040 0.29 +0.5
4,826,906 + AO353_22040 0.29 +2.0
4,826,906 + AO353_22040 0.29 -1.3
4,826,906 + AO353_22040 0.29 -1.3
4,826,907 - AO353_22040 0.29 -1.3
4,826,907 - AO353_22040 0.29 +0.1
4,826,907 - AO353_22040 0.29 -1.3
4,826,907 - AO353_22040 0.29 -2.6
4,826,910 + AO353_22040 0.30 +0.2
4,826,910 + AO353_22040 0.30 -2.3
4,826,911 - AO353_22040 0.30 +1.7
4,826,911 - AO353_22040 0.30 +2.7
4,826,911 - AO353_22040 0.30 -0.3
4,826,911 - AO353_22040 0.30 -1.9
4,826,929 + AO353_22040 0.33 -0.9
4,826,929 + AO353_22040 0.33 -1.9
4,826,930 - AO353_22040 0.33 +4.0
4,826,965 + AO353_22040 0.40 +1.5
4,826,966 - AO353_22040 0.40 +2.5
4,826,966 - AO353_22040 0.40 -3.1
4,826,966 - AO353_22040 0.40 +2.1
4,826,966 - AO353_22040 0.40 +0.1
4,826,966 - AO353_22040 0.40 +2.7
4,827,005 + AO353_22040 0.47 -2.3
4,827,006 - AO353_22040 0.47 +0.5
4,827,488 + AO353_22045 0.16 +1.3
4,827,718 + AO353_22045 0.34 +0.3
4,827,718 + AO353_22045 0.34 +0.1
4,827,719 - AO353_22045 0.34 -2.3
4,827,754 - AO353_22045 0.37 +0.4
4,827,813 + AO353_22045 0.42 -2.3
4,827,911 + AO353_22045 0.50 +0.3
4,827,911 + AO353_22045 0.50 -1.1
4,827,911 + AO353_22045 0.50 -2.3
4,827,912 - AO353_22045 0.50 -1.3
4,827,912 - AO353_22045 0.50 -2.6
4,827,912 - AO353_22045 0.50 -2.1
4,827,974 + AO353_22045 0.55 -2.6
4,827,974 + AO353_22045 0.55 -1.9
4,827,975 - AO353_22045 0.55 -1.3
4,828,071 + AO353_22045 0.63 +0.4
4,828,072 - AO353_22045 0.63 -0.6

Or see this region's nucleotide sequence