Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21575

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21565 and AO353_21570 are separated by 18 nucleotidesAO353_21570 and AO353_21575 overlap by 4 nucleotidesAO353_21575 and AO353_21580 overlap by 4 nucleotides AO353_21565: AO353_21565 - type VI secretion protein, at 4,719,842 to 4,721,173 _21565 AO353_21570: AO353_21570 - type VI secretion system protein ImpK, at 4,721,192 to 4,721,959 _21570 AO353_21575: AO353_21575 - type VI secretion system protein ImpL, at 4,721,956 to 4,725,774 _21575 AO353_21580: AO353_21580 - type VI secretion protein, at 4,725,771 to 4,726,871 _21580 Position (kb) 4721 4722 4723 4724 4725 4726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4721.015 kb on + strand, within AO353_21565at 4721.015 kb on + strand, within AO353_21565at 4721.033 kb on - strand, within AO353_21565at 4721.432 kb on + strand, within AO353_21570at 4721.432 kb on + strand, within AO353_21570at 4721.433 kb on - strand, within AO353_21570at 4721.433 kb on - strand, within AO353_21570at 4721.511 kb on + strand, within AO353_21570at 4721.525 kb on + strand, within AO353_21570at 4721.525 kb on + strand, within AO353_21570at 4721.525 kb on + strandat 4721.525 kb on + strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.634 kb on + strand, within AO353_21570at 4722.070 kb on + strandat 4722.459 kb on - strand, within AO353_21575at 4722.487 kb on + strand, within AO353_21575at 4722.487 kb on + strand, within AO353_21575at 4722.487 kb on + strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.589 kb on + strand, within AO353_21575at 4722.589 kb on + strand, within AO353_21575at 4722.589 kb on + strand, within AO353_21575at 4722.590 kb on - strand, within AO353_21575at 4722.590 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strandat 4722.849 kb on + strand, within AO353_21575at 4722.872 kb on - strand, within AO353_21575at 4723.377 kb on + strand, within AO353_21575at 4723.378 kb on - strand, within AO353_21575at 4723.414 kb on + strand, within AO353_21575at 4723.414 kb on + strand, within AO353_21575at 4723.414 kb on + strand, within AO353_21575at 4723.414 kb on + strand, within AO353_21575at 4723.414 kb on + strand, within AO353_21575at 4723.415 kb on - strand, within AO353_21575at 4723.415 kb on - strand, within AO353_21575at 4723.585 kb on + strand, within AO353_21575at 4723.585 kb on + strand, within AO353_21575at 4723.585 kb on + strand, within AO353_21575at 4723.586 kb on - strand, within AO353_21575at 4723.586 kb on - strand, within AO353_21575at 4723.586 kb on - strand, within AO353_21575at 4723.586 kb on - strand, within AO353_21575at 4723.702 kb on + strand, within AO353_21575at 4723.702 kb on + strand, within AO353_21575at 4723.703 kb on - strand, within AO353_21575at 4724.215 kb on + strand, within AO353_21575at 4724.216 kb on - strand, within AO353_21575at 4724.216 kb on - strand, within AO353_21575at 4724.227 kb on + strand, within AO353_21575at 4724.227 kb on + strand, within AO353_21575at 4724.228 kb on - strand, within AO353_21575at 4724.237 kb on - strand, within AO353_21575at 4724.237 kb on - strand, within AO353_21575at 4724.259 kb on + strand, within AO353_21575at 4724.260 kb on - strand, within AO353_21575at 4724.507 kb on + strand, within AO353_21575at 4724.508 kb on - strand, within AO353_21575at 4724.508 kb on - strand, within AO353_21575at 4724.542 kb on - strand, within AO353_21575at 4724.584 kb on + strand, within AO353_21575at 4724.585 kb on - strand, within AO353_21575at 4724.652 kb on + strand, within AO353_21575at 4724.653 kb on - strand, within AO353_21575at 4724.664 kb on + strand, within AO353_21575at 4724.664 kb on + strand, within AO353_21575at 4724.664 kb on + strand, within AO353_21575at 4724.664 kb on + strand, within AO353_21575at 4724.664 kb on + strand, within AO353_21575at 4724.664 kb on + strand, within AO353_21575at 4724.665 kb on - strand, within AO353_21575at 4724.665 kb on - strand, within AO353_21575at 4724.665 kb on - strand, within AO353_21575at 4724.767 kb on + strand, within AO353_21575at 4724.768 kb on - strand, within AO353_21575at 4724.768 kb on - strand, within AO353_21575at 4724.768 kb on - strand, within AO353_21575at 4724.998 kb on + strand, within AO353_21575at 4724.998 kb on + strand, within AO353_21575at 4724.998 kb on + strand, within AO353_21575at 4725.010 kb on + strand, within AO353_21575at 4725.225 kb on + strand, within AO353_21575at 4725.565 kb on + strandat 4725.565 kb on + strandat 4725.566 kb on - strandat 4725.566 kb on - strandat 4725.787 kb on + strandat 4725.787 kb on + strandat 4725.788 kb on - strandat 4725.873 kb on + strandat 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.480 kb on - strand, within AO353_21580at 4726.503 kb on + strand, within AO353_21580at 4726.504 kb on - strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,721,015 + AO353_21565 0.88 -1.3
4,721,015 + AO353_21565 0.88 +0.6
4,721,033 - AO353_21565 0.89 -0.5
4,721,432 + AO353_21570 0.31 -1.9
4,721,432 + AO353_21570 0.31 +0.7
4,721,433 - AO353_21570 0.31 +2.1
4,721,433 - AO353_21570 0.31 +2.3
4,721,511 + AO353_21570 0.42 -2.3
4,721,525 + AO353_21570 0.43 -2.3
4,721,525 + AO353_21570 0.43 -1.3
4,721,525 + -0.3
4,721,525 + AO353_21570 0.43 -2.9
4,721,526 - AO353_21570 0.43 -1.6
4,721,526 - AO353_21570 0.43 +1.4
4,721,526 - AO353_21570 0.43 +1.3
4,721,526 - AO353_21570 0.43 +1.1
4,721,618 + AO353_21570 0.55 -2.3
4,721,618 + AO353_21570 0.55 +0.7
4,721,618 + AO353_21570 0.55 -0.8
4,721,618 + AO353_21570 0.55 -1.9
4,721,634 + AO353_21570 0.58 -0.3
4,722,070 + -2.3
4,722,459 - AO353_21575 0.13 -1.9
4,722,487 + AO353_21575 0.14 -1.9
4,722,487 + AO353_21575 0.14 -2.3
4,722,487 + AO353_21575 0.14 +1.6
4,722,488 - AO353_21575 0.14 -2.0
4,722,488 - AO353_21575 0.14 -1.3
4,722,488 - AO353_21575 0.14 -2.3
4,722,488 - AO353_21575 0.14 -0.6
4,722,488 - AO353_21575 0.14 -0.8
4,722,589 + AO353_21575 0.17 -2.3
4,722,589 + AO353_21575 0.17 -1.9
4,722,589 + AO353_21575 0.17 -0.1
4,722,590 - AO353_21575 0.17 -1.3
4,722,590 - AO353_21575 0.17 -2.6
4,722,821 - AO353_21575 0.23 -1.3
4,722,821 - AO353_21575 0.23 -2.3
4,722,821 - AO353_21575 0.23 +0.5
4,722,821 - AO353_21575 0.23 -0.9
4,722,821 - -1.3
4,722,849 + AO353_21575 0.23 -1.9
4,722,872 - AO353_21575 0.24 -2.1
4,723,377 + AO353_21575 0.37 +1.1
4,723,378 - AO353_21575 0.37 +1.7
4,723,414 + AO353_21575 0.38 +2.2
4,723,414 + AO353_21575 0.38 +1.4
4,723,414 + AO353_21575 0.38 +1.8
4,723,414 + AO353_21575 0.38 -1.0
4,723,414 + AO353_21575 0.38 -2.6
4,723,415 - AO353_21575 0.38 -0.9
4,723,415 - AO353_21575 0.38 +2.2
4,723,585 + AO353_21575 0.43 +0.7
4,723,585 + AO353_21575 0.43 +1.5
4,723,585 + AO353_21575 0.43 -0.3
4,723,586 - AO353_21575 0.43 -0.3
4,723,586 - AO353_21575 0.43 -0.3
4,723,586 - AO353_21575 0.43 -2.3
4,723,586 - AO353_21575 0.43 +0.1
4,723,702 + AO353_21575 0.46 -2.6
4,723,702 + AO353_21575 0.46 +1.0
4,723,703 - AO353_21575 0.46 -0.3
4,724,215 + AO353_21575 0.59 -2.9
4,724,216 - AO353_21575 0.59 +1.3
4,724,216 - AO353_21575 0.59 -0.6
4,724,227 + AO353_21575 0.59 -2.6
4,724,227 + AO353_21575 0.59 -0.3
4,724,228 - AO353_21575 0.59 -1.6
4,724,237 - AO353_21575 0.60 -2.9
4,724,237 - AO353_21575 0.60 +1.7
4,724,259 + AO353_21575 0.60 +1.1
4,724,260 - AO353_21575 0.60 +0.3
4,724,507 + AO353_21575 0.67 -1.3
4,724,508 - AO353_21575 0.67 +0.2
4,724,508 - AO353_21575 0.67 -3.4
4,724,542 - AO353_21575 0.68 +0.0
4,724,584 + AO353_21575 0.69 -2.3
4,724,585 - AO353_21575 0.69 +2.4
4,724,652 + AO353_21575 0.71 -1.3
4,724,653 - AO353_21575 0.71 +0.6
4,724,664 + AO353_21575 0.71 -1.9
4,724,664 + AO353_21575 0.71 +1.3
4,724,664 + AO353_21575 0.71 -1.6
4,724,664 + AO353_21575 0.71 +1.6
4,724,664 + AO353_21575 0.71 -0.8
4,724,664 + AO353_21575 0.71 -0.3
4,724,665 - AO353_21575 0.71 +2.5
4,724,665 - AO353_21575 0.71 -1.9
4,724,665 - AO353_21575 0.71 +0.3
4,724,767 + AO353_21575 0.74 +1.9
4,724,768 - AO353_21575 0.74 +2.5
4,724,768 - AO353_21575 0.74 -0.3
4,724,768 - AO353_21575 0.74 +0.7
4,724,998 + AO353_21575 0.80 -0.3
4,724,998 + AO353_21575 0.80 -1.9
4,724,998 + AO353_21575 0.80 -0.3
4,725,010 + AO353_21575 0.80 -0.3
4,725,225 + AO353_21575 0.86 -0.7
4,725,565 + -1.3
4,725,565 + -0.3
4,725,566 - -1.3
4,725,566 - -0.9
4,725,787 + -0.3
4,725,787 + +0.6
4,725,788 - -0.3
4,725,873 + +1.1
4,726,479 + AO353_21580 0.64 +0.2
4,726,479 + AO353_21580 0.64 -0.9
4,726,479 + AO353_21580 0.64 -1.3
4,726,479 + AO353_21580 0.64 -1.9
4,726,480 - AO353_21580 0.64 +2.0
4,726,503 + AO353_21580 0.66 +1.7
4,726,504 - AO353_21580 0.67 -1.9
4,726,755 + AO353_21580 0.89 -2.3
4,726,755 + AO353_21580 0.89 -1.3
4,726,755 + AO353_21580 0.89 +0.7
4,726,755 + AO353_21580 0.89 +0.7
4,726,756 - AO353_21580 0.89 -2.3
4,726,756 - AO353_21580 0.89 -1.9
4,726,756 - AO353_21580 0.89 +0.9
4,726,756 - AO353_21580 0.89 -1.3
4,726,756 - AO353_21580 0.89 +1.3
4,726,756 - AO353_21580 0.89 -0.9

Or see this region's nucleotide sequence