Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19510

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19505 and AO353_19510 are separated by 93 nucleotidesAO353_19510 and AO353_19515 are separated by 146 nucleotides AO353_19505: AO353_19505 - FAD-dependent oxidoreductase, at 4,274,106 to 4,275,401 _19505 AO353_19510: AO353_19510 - aldehyde dehydrogenase, at 4,275,495 to 4,276,985 _19510 AO353_19515: AO353_19515 - haloacid dehalogenase, at 4,277,132 to 4,277,803 _19515 Position (kb) 4275 4276 4277Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4274.680 kb on - strand, within AO353_19505at 4274.742 kb on + strand, within AO353_19505at 4274.743 kb on - strand, within AO353_19505at 4274.743 kb on - strand, within AO353_19505at 4274.984 kb on + strand, within AO353_19505at 4275.075 kb on + strand, within AO353_19505at 4275.076 kb on - strand, within AO353_19505at 4275.076 kb on - strand, within AO353_19505at 4275.376 kb on + strandat 4275.399 kb on + strandat 4275.400 kb on - strandat 4275.458 kb on + strandat 4275.459 kb on - strandat 4275.496 kb on + strandat 4275.497 kb on - strandat 4275.497 kb on - strandat 4275.529 kb on + strandat 4275.530 kb on - strandat 4275.530 kb on - strandat 4275.530 kb on - strandat 4275.547 kb on + strandat 4275.581 kb on - strandat 4275.692 kb on + strand, within AO353_19510at 4275.692 kb on + strand, within AO353_19510at 4275.693 kb on - strand, within AO353_19510at 4275.709 kb on + strand, within AO353_19510at 4275.728 kb on + strand, within AO353_19510at 4275.913 kb on + strand, within AO353_19510at 4275.913 kb on + strand, within AO353_19510at 4275.913 kb on + strand, within AO353_19510at 4275.913 kb on + strand, within AO353_19510at 4275.913 kb on + strand, within AO353_19510at 4275.913 kb on + strand, within AO353_19510at 4275.913 kb on + strand, within AO353_19510at 4275.914 kb on - strand, within AO353_19510at 4275.914 kb on - strand, within AO353_19510at 4275.914 kb on - strand, within AO353_19510at 4275.914 kb on - strand, within AO353_19510at 4275.914 kb on - strand, within AO353_19510at 4275.914 kb on - strand, within AO353_19510at 4275.914 kb on - strand, within AO353_19510at 4275.919 kb on + strand, within AO353_19510at 4275.919 kb on + strand, within AO353_19510at 4275.920 kb on - strand, within AO353_19510at 4275.920 kb on - strand, within AO353_19510at 4275.920 kb on - strand, within AO353_19510at 4275.920 kb on - strand, within AO353_19510at 4275.920 kb on - strand, within AO353_19510at 4276.054 kb on + strand, within AO353_19510at 4276.055 kb on - strand, within AO353_19510at 4276.055 kb on - strand, within AO353_19510at 4276.055 kb on - strand, within AO353_19510at 4276.055 kb on - strand, within AO353_19510at 4276.055 kb on - strand, within AO353_19510at 4276.326 kb on + strand, within AO353_19510at 4276.326 kb on + strand, within AO353_19510at 4276.327 kb on - strand, within AO353_19510at 4276.603 kb on + strand, within AO353_19510at 4276.603 kb on + strand, within AO353_19510at 4276.603 kb on + strand, within AO353_19510at 4276.603 kb on + strand, within AO353_19510at 4276.603 kb on + strand, within AO353_19510at 4276.603 kb on + strand, within AO353_19510at 4276.692 kb on + strand, within AO353_19510at 4276.692 kb on + strand, within AO353_19510at 4276.692 kb on + strand, within AO353_19510at 4276.692 kb on + strand, within AO353_19510at 4276.693 kb on - strand, within AO353_19510at 4276.693 kb on - strand, within AO353_19510at 4276.693 kb on - strand, within AO353_19510at 4276.972 kb on + strandat 4276.973 kb on - strandat 4276.973 kb on - strandat 4276.988 kb on + strandat 4276.988 kb on + strandat 4276.988 kb on + strandat 4276.988 kb on + strandat 4276.988 kb on + strandat 4276.988 kb on + strandat 4276.989 kb on - strandat 4276.989 kb on - strandat 4277.054 kb on + strandat 4277.055 kb on - strandat 4277.055 kb on - strandat 4277.055 kb on - strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.133 kb on + strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.134 kb on - strandat 4277.135 kb on + strandat 4277.135 kb on + strandat 4277.135 kb on + strandat 4277.135 kb on + strandat 4277.136 kb on - strandat 4277.136 kb on - strandat 4277.413 kb on + strand, within AO353_19515at 4277.413 kb on + strand, within AO353_19515at 4277.413 kb on + strand, within AO353_19515at 4277.413 kb on + strand, within AO353_19515at 4277.413 kb on + strand, within AO353_19515at 4277.413 kb on + strand, within AO353_19515at 4277.413 kb on + strand, within AO353_19515at 4277.413 kb on + strand, within AO353_19515at 4277.414 kb on - strand, within AO353_19515at 4277.414 kb on - strand, within AO353_19515at 4277.414 kb on - strand, within AO353_19515at 4277.638 kb on - strand, within AO353_19515at 4277.839 kb on - strandat 4277.851 kb on + strandat 4277.851 kb on + strandat 4277.851 kb on + strandat 4277.851 kb on + strandat 4277.852 kb on - strandat 4277.852 kb on - strandat 4277.853 kb on + strandat 4277.853 kb on + strandat 4277.854 kb on - strandat 4277.869 kb on + strandat 4277.869 kb on + strandat 4277.869 kb on + strandat 4277.869 kb on + strandat 4277.869 kb on + strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.870 kb on - strandat 4277.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,274,680 - AO353_19505 0.44 +1.1
4,274,742 + AO353_19505 0.49 -1.1
4,274,743 - AO353_19505 0.49 -0.8
4,274,743 - AO353_19505 0.49 -2.2
4,274,984 + AO353_19505 0.68 -2.8
4,275,075 + AO353_19505 0.75 -0.2
4,275,076 - AO353_19505 0.75 -0.2
4,275,076 - AO353_19505 0.75 -1.2
4,275,376 + -0.6
4,275,399 + -1.2
4,275,400 - +0.4
4,275,458 + +2.6
4,275,459 - -0.2
4,275,496 + -2.2
4,275,497 - +0.2
4,275,497 - +1.2
4,275,529 + -0.8
4,275,530 - +0.6
4,275,530 - -1.2
4,275,530 - -1.2
4,275,547 + -1.2
4,275,581 - -2.5
4,275,692 + AO353_19510 0.13 +1.8
4,275,692 + AO353_19510 0.13 -1.2
4,275,693 - AO353_19510 0.13 +0.4
4,275,709 + AO353_19510 0.14 -1.2
4,275,728 + AO353_19510 0.16 -1.8
4,275,913 + AO353_19510 0.28 +1.4
4,275,913 + AO353_19510 0.28 +3.8
4,275,913 + AO353_19510 0.28 +4.1
4,275,913 + AO353_19510 0.28 -0.2
4,275,913 + AO353_19510 0.28 +3.9
4,275,913 + AO353_19510 0.28 +0.0
4,275,913 + AO353_19510 0.28 +1.4
4,275,914 - AO353_19510 0.28 -1.2
4,275,914 - AO353_19510 0.28 -1.8
4,275,914 - AO353_19510 0.28 -0.2
4,275,914 - AO353_19510 0.28 +0.5
4,275,914 - AO353_19510 0.28 -0.2
4,275,914 - AO353_19510 0.28 +1.4
4,275,914 - AO353_19510 0.28 +1.7
4,275,919 + AO353_19510 0.28 +0.6
4,275,919 + AO353_19510 0.28 -2.2
4,275,920 - AO353_19510 0.29 +1.0
4,275,920 - AO353_19510 0.29 +0.4
4,275,920 - AO353_19510 0.29 +2.8
4,275,920 - AO353_19510 0.29 +0.2
4,275,920 - AO353_19510 0.29 +0.9
4,276,054 + AO353_19510 0.37 -2.2
4,276,055 - AO353_19510 0.38 -1.2
4,276,055 - AO353_19510 0.38 +0.2
4,276,055 - AO353_19510 0.38 -0.5
4,276,055 - AO353_19510 0.38 +0.3
4,276,055 - AO353_19510 0.38 +1.4
4,276,326 + AO353_19510 0.56 +0.2
4,276,326 + AO353_19510 0.56 -2.2
4,276,327 - AO353_19510 0.56 +1.4
4,276,603 + AO353_19510 0.74 +1.0
4,276,603 + AO353_19510 0.74 -0.2
4,276,603 + AO353_19510 0.74 +2.3
4,276,603 + AO353_19510 0.74 -3.8
4,276,603 + AO353_19510 0.74 -1.2
4,276,603 + AO353_19510 0.74 -1.2
4,276,692 + AO353_19510 0.80 -1.8
4,276,692 + AO353_19510 0.80 -0.2
4,276,692 + AO353_19510 0.80 -1.2
4,276,692 + AO353_19510 0.80 -0.8
4,276,693 - AO353_19510 0.80 -2.2
4,276,693 - AO353_19510 0.80 +2.1
4,276,693 - AO353_19510 0.80 -1.2
4,276,972 + +0.6
4,276,973 - -1.2
4,276,973 - -0.2
4,276,988 + -2.2
4,276,988 + -1.4
4,276,988 + +1.5
4,276,988 + +2.6
4,276,988 + +1.0
4,276,988 + +2.6
4,276,989 - -1.2
4,276,989 - +1.0
4,277,054 + -0.8
4,277,055 - +0.8
4,277,055 - -1.8
4,277,055 - -0.2
4,277,133 + +0.4
4,277,133 + -1.4
4,277,133 + -0.2
4,277,133 + -0.9
4,277,133 + +1.8
4,277,133 + -1.5
4,277,133 + +1.6
4,277,133 + +1.0
4,277,133 + -1.6
4,277,133 + +2.5
4,277,133 + +0.8
4,277,133 + -1.2
4,277,133 + +2.7
4,277,133 + -1.4
4,277,133 + -0.2
4,277,133 + +1.4
4,277,133 + -3.0
4,277,133 + -1.8
4,277,133 + +0.4
4,277,133 + -2.5
4,277,133 + -0.2
4,277,133 + -0.2
4,277,133 + -0.4
4,277,133 + -1.5
4,277,133 + +1.1
4,277,133 + +0.5
4,277,133 + +2.4
4,277,133 + -1.6
4,277,133 + -1.2
4,277,133 + -0.2
4,277,134 - -0.8
4,277,134 - -1.2
4,277,134 - -0.8
4,277,134 - +3.0
4,277,134 - +0.8
4,277,134 - +0.5
4,277,134 - -0.2
4,277,134 - -1.8
4,277,134 - +1.0
4,277,134 - -3.4
4,277,134 - +0.4
4,277,134 - +0.4
4,277,134 - +0.9
4,277,134 - -2.5
4,277,134 - -2.2
4,277,134 - +0.6
4,277,135 + +1.1
4,277,135 + -0.4
4,277,135 + -0.2
4,277,135 + -0.2
4,277,136 - +0.2
4,277,136 - -2.2
4,277,413 + AO353_19515 0.42 +0.3
4,277,413 + AO353_19515 0.42 +1.9
4,277,413 + AO353_19515 0.42 -0.2
4,277,413 + AO353_19515 0.42 +0.5
4,277,413 + AO353_19515 0.42 -1.0
4,277,413 + AO353_19515 0.42 +1.4
4,277,413 + AO353_19515 0.42 -0.8
4,277,413 + AO353_19515 0.42 -0.2
4,277,414 - AO353_19515 0.42 +1.3
4,277,414 - AO353_19515 0.42 -2.2
4,277,414 - AO353_19515 0.42 -1.2
4,277,638 - AO353_19515 0.75 -0.2
4,277,839 - -1.2
4,277,851 + -1.2
4,277,851 + +1.0
4,277,851 + -3.2
4,277,851 + -2.5
4,277,852 - -1.8
4,277,852 - +1.8
4,277,853 + -0.2
4,277,853 + -0.8
4,277,854 - -0.2
4,277,869 + -0.1
4,277,869 + +1.5
4,277,869 + -1.2
4,277,869 + -0.2
4,277,869 + -2.8
4,277,870 - +3.6
4,277,870 - -1.8
4,277,870 - -0.2
4,277,870 - +0.5
4,277,870 - -0.2
4,277,870 - -1.2
4,277,870 - +1.2
4,277,870 - -0.4
4,277,870 - -1.2
4,277,870 - -0.2
4,277,905 + +0.2

Or see this region's nucleotide sequence