Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18455

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18445 and AO353_18450 overlap by 7 nucleotidesAO353_18450 and AO353_18455 are separated by 91 nucleotidesAO353_18455 and AO353_18460 are separated by 134 nucleotides AO353_18445: AO353_18445 - selenoprotein, at 4,064,098 to 4,064,385 _18445 AO353_18450: AO353_18450 - hypothetical protein, at 4,064,379 to 4,065,272 _18450 AO353_18455: AO353_18455 - AraC family transcriptional regulator, at 4,065,364 to 4,066,122 _18455 AO353_18460: AO353_18460 - serine/threonine protein phosphatase, at 4,066,257 to 4,067,072 _18460 Position (kb) 4065 4066 4067Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4064.373 kb on + strandat 4064.373 kb on + strandat 4064.373 kb on + strandat 4064.373 kb on + strandat 4064.373 kb on + strandat 4064.374 kb on - strandat 4064.374 kb on - strandat 4064.533 kb on + strand, within AO353_18450at 4064.533 kb on + strand, within AO353_18450at 4064.718 kb on + strand, within AO353_18450at 4064.718 kb on + strand, within AO353_18450at 4064.718 kb on + strand, within AO353_18450at 4064.719 kb on - strand, within AO353_18450at 4064.719 kb on - strand, within AO353_18450at 4064.719 kb on - strand, within AO353_18450at 4064.719 kb on - strand, within AO353_18450at 4064.753 kb on + strand, within AO353_18450at 4064.753 kb on + strand, within AO353_18450at 4064.754 kb on - strand, within AO353_18450at 4064.754 kb on - strand, within AO353_18450at 4064.834 kb on + strand, within AO353_18450at 4064.835 kb on - strand, within AO353_18450at 4064.835 kb on - strand, within AO353_18450at 4065.282 kb on + strandat 4065.282 kb on + strandat 4065.290 kb on - strandat 4065.366 kb on - strandat 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.539 kb on + strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.540 kb on - strand, within AO353_18455at 4065.647 kb on + strand, within AO353_18455at 4065.647 kb on + strand, within AO353_18455at 4065.648 kb on - strand, within AO353_18455at 4065.739 kb on + strand, within AO353_18455at 4065.740 kb on - strand, within AO353_18455at 4065.970 kb on + strand, within AO353_18455at 4066.094 kb on + strandat 4066.094 kb on + strandat 4066.095 kb on - strandat 4066.102 kb on + strandat 4066.103 kb on - strandat 4066.150 kb on + strandat 4066.150 kb on + strandat 4066.151 kb on - strandat 4066.192 kb on + strandat 4066.192 kb on + strandat 4066.192 kb on + strandat 4066.192 kb on + strandat 4066.192 kb on + strandat 4066.193 kb on - strandat 4066.193 kb on - strandat 4066.193 kb on - strandat 4066.193 kb on - strandat 4066.193 kb on - strandat 4066.208 kb on + strandat 4066.208 kb on + strandat 4066.209 kb on - strandat 4066.209 kb on - strandat 4066.211 kb on + strandat 4066.289 kb on + strandat 4066.290 kb on - strandat 4066.381 kb on - strand, within AO353_18460at 4066.381 kb on - strand, within AO353_18460at 4066.398 kb on + strand, within AO353_18460at 4066.399 kb on - strand, within AO353_18460at 4066.399 kb on - strand, within AO353_18460at 4066.399 kb on - strand, within AO353_18460at 4066.399 kb on - strand, within AO353_18460at 4066.399 kb on - strand, within AO353_18460at 4066.399 kb on - strand, within AO353_18460at 4066.446 kb on + strand, within AO353_18460at 4066.446 kb on + strand, within AO353_18460at 4066.446 kb on + strand, within AO353_18460at 4066.446 kb on + strand, within AO353_18460at 4066.446 kb on + strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.447 kb on - strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.518 kb on + strand, within AO353_18460at 4066.519 kb on - strand, within AO353_18460at 4066.519 kb on - strand, within AO353_18460at 4066.519 kb on - strand, within AO353_18460at 4066.519 kb on - strand, within AO353_18460at 4066.519 kb on - strand, within AO353_18460at 4066.519 kb on - strand, within AO353_18460at 4066.519 kb on - strand, within AO353_18460at 4066.574 kb on + strand, within AO353_18460at 4066.574 kb on + strand, within AO353_18460at 4066.575 kb on - strand, within AO353_18460at 4066.577 kb on + strand, within AO353_18460at 4066.577 kb on + strand, within AO353_18460at 4066.577 kb on + strand, within AO353_18460at 4066.577 kb on + strand, within AO353_18460at 4066.577 kb on + strand, within AO353_18460at 4066.577 kb on + strand, within AO353_18460at 4066.578 kb on - strand, within AO353_18460at 4066.578 kb on - strand, within AO353_18460at 4066.578 kb on - strand, within AO353_18460at 4066.578 kb on - strand, within AO353_18460at 4066.578 kb on - strand, within AO353_18460at 4066.668 kb on + strand, within AO353_18460at 4066.768 kb on - strand, within AO353_18460at 4066.786 kb on - strand, within AO353_18460at 4066.786 kb on - strand, within AO353_18460at 4066.932 kb on + strand, within AO353_18460at 4066.932 kb on + strand, within AO353_18460at 4066.932 kb on + strand, within AO353_18460at 4066.932 kb on + strand, within AO353_18460at 4067.004 kb on + strandat 4067.004 kb on + strandat 4067.004 kb on + strandat 4067.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,064,373 + -2.2
4,064,373 + +0.8
4,064,373 + -1.5
4,064,373 + +0.2
4,064,373 + +1.4
4,064,374 - -1.5
4,064,374 - -0.6
4,064,533 + AO353_18450 0.17 +0.4
4,064,533 + AO353_18450 0.17 -2.8
4,064,718 + AO353_18450 0.38 -1.2
4,064,718 + AO353_18450 0.38 +1.4
4,064,718 + AO353_18450 0.38 -1.8
4,064,719 - AO353_18450 0.38 -0.8
4,064,719 - AO353_18450 0.38 +1.4
4,064,719 - AO353_18450 0.38 +0.3
4,064,719 - AO353_18450 0.38 +1.4
4,064,753 + AO353_18450 0.42 -1.8
4,064,753 + AO353_18450 0.42 -1.2
4,064,754 - AO353_18450 0.42 -3.5
4,064,754 - AO353_18450 0.42 +1.2
4,064,834 + AO353_18450 0.51 -2.8
4,064,835 - AO353_18450 0.51 -2.2
4,064,835 - AO353_18450 0.51 -0.2
4,065,282 + +1.4
4,065,282 + +0.3
4,065,290 - +2.1
4,065,366 - +1.4
4,065,539 + AO353_18455 0.23 +1.8
4,065,539 + AO353_18455 0.23 +2.4
4,065,539 + AO353_18455 0.23 +0.3
4,065,539 + AO353_18455 0.23 -2.2
4,065,539 + AO353_18455 0.23 -1.2
4,065,539 + AO353_18455 0.23 -1.8
4,065,539 + AO353_18455 0.23 -3.0
4,065,539 + AO353_18455 0.23 -0.4
4,065,539 + AO353_18455 0.23 -1.2
4,065,540 - AO353_18455 0.23 -1.8
4,065,540 - AO353_18455 0.23 +0.1
4,065,540 - AO353_18455 0.23 +0.6
4,065,540 - AO353_18455 0.23 +0.6
4,065,540 - AO353_18455 0.23 -0.2
4,065,540 - AO353_18455 0.23 -0.2
4,065,540 - AO353_18455 0.23 -0.2
4,065,540 - AO353_18455 0.23 +0.4
4,065,540 - AO353_18455 0.23 +0.8
4,065,647 + AO353_18455 0.37 -0.6
4,065,647 + AO353_18455 0.37 +0.8
4,065,648 - AO353_18455 0.37 -1.8
4,065,739 + AO353_18455 0.49 +2.6
4,065,740 - AO353_18455 0.50 -2.2
4,065,970 + AO353_18455 0.80 -0.2
4,066,094 + +1.2
4,066,094 + -1.8
4,066,095 - -0.2
4,066,102 + -0.2
4,066,103 - +0.1
4,066,150 + -2.5
4,066,150 + -2.8
4,066,151 - +0.8
4,066,192 + +0.4
4,066,192 + +0.7
4,066,192 + +0.0
4,066,192 + -2.5
4,066,192 + +1.4
4,066,193 - -1.2
4,066,193 - -1.2
4,066,193 - +1.3
4,066,193 - +0.1
4,066,193 - -0.5
4,066,208 + +1.8
4,066,208 + -2.5
4,066,209 - +1.9
4,066,209 - +0.7
4,066,211 + -1.2
4,066,289 + -1.2
4,066,290 - +1.8
4,066,381 - AO353_18460 0.15 +2.2
4,066,381 - AO353_18460 0.15 +2.8
4,066,398 + AO353_18460 0.17 -2.2
4,066,399 - AO353_18460 0.17 +0.6
4,066,399 - AO353_18460 0.17 +1.2
4,066,399 - AO353_18460 0.17 +2.3
4,066,399 - AO353_18460 0.17 +0.0
4,066,399 - AO353_18460 0.17 +0.3
4,066,399 - AO353_18460 0.17 -0.2
4,066,446 + AO353_18460 0.23 -1.2
4,066,446 + AO353_18460 0.23 -3.0
4,066,446 + AO353_18460 0.23 -1.8
4,066,446 + AO353_18460 0.23 +0.7
4,066,446 + AO353_18460 0.23 +1.7
4,066,447 - AO353_18460 0.23 -1.8
4,066,447 - AO353_18460 0.23 -0.5
4,066,447 - AO353_18460 0.23 -0.2
4,066,447 - AO353_18460 0.23 +0.8
4,066,447 - AO353_18460 0.23 +1.6
4,066,447 - AO353_18460 0.23 +0.1
4,066,447 - AO353_18460 0.23 +1.8
4,066,447 - AO353_18460 0.23 +2.4
4,066,447 - AO353_18460 0.23 -1.2
4,066,447 - AO353_18460 0.23 -0.2
4,066,447 - AO353_18460 0.23 -0.2
4,066,518 + AO353_18460 0.32 -0.2
4,066,518 + AO353_18460 0.32 -0.8
4,066,518 + AO353_18460 0.32 +1.4
4,066,518 + AO353_18460 0.32 -0.2
4,066,518 + AO353_18460 0.32 -1.2
4,066,518 + AO353_18460 0.32 -1.2
4,066,518 + AO353_18460 0.32 -2.2
4,066,518 + AO353_18460 0.32 +0.2
4,066,519 - AO353_18460 0.32 -0.2
4,066,519 - AO353_18460 0.32 +0.2
4,066,519 - AO353_18460 0.32 +1.8
4,066,519 - AO353_18460 0.32 -1.8
4,066,519 - AO353_18460 0.32 +2.2
4,066,519 - AO353_18460 0.32 -1.8
4,066,519 - AO353_18460 0.32 -0.2
4,066,574 + AO353_18460 0.39 +0.2
4,066,574 + AO353_18460 0.39 +0.8
4,066,575 - AO353_18460 0.39 -1.4
4,066,577 + AO353_18460 0.39 -0.2
4,066,577 + AO353_18460 0.39 +2.2
4,066,577 + AO353_18460 0.39 -0.2
4,066,577 + AO353_18460 0.39 +0.8
4,066,577 + AO353_18460 0.39 -0.8
4,066,577 + AO353_18460 0.39 +1.8
4,066,578 - AO353_18460 0.39 +3.3
4,066,578 - AO353_18460 0.39 -1.8
4,066,578 - AO353_18460 0.39 +1.2
4,066,578 - AO353_18460 0.39 -2.2
4,066,578 - AO353_18460 0.39 +2.4
4,066,668 + AO353_18460 0.50 +2.8
4,066,768 - AO353_18460 0.63 +0.8
4,066,786 - AO353_18460 0.65 +0.3
4,066,786 - AO353_18460 0.65 +1.2
4,066,932 + AO353_18460 0.83 -2.5
4,066,932 + AO353_18460 0.83 -1.2
4,066,932 + AO353_18460 0.83 +1.3
4,066,932 + AO353_18460 0.83 +1.1
4,067,004 + -1.2
4,067,004 + -3.2
4,067,004 + -0.2
4,067,085 - -0.2

Or see this region's nucleotide sequence