Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17335

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17325 and AO353_17330 are separated by 25 nucleotidesAO353_17330 and AO353_17335 are separated by 154 nucleotidesAO353_17335 and AO353_17340 are separated by 105 nucleotidesAO353_17340 and AO353_17345 overlap by 1 nucleotides AO353_17325: AO353_17325 - arabinose transporter permease, at 3,829,919 to 3,831,085 _17325 AO353_17330: AO353_17330 - ArsR family transcriptional regulator, at 3,831,111 to 3,831,416 _17330 AO353_17335: AO353_17335 - ACP phosphodiesterase, at 3,831,571 to 3,832,164 _17335 AO353_17340: AO353_17340 - glycerol acyltransferase, at 3,832,270 to 3,833,064 _17340 AO353_17345: AO353_17345 - hemolysin, at 3,833,064 to 3,833,819 _17345 Position (kb) 3831 3832 3833Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3830.654 kb on + strand, within AO353_17325at 3830.814 kb on + strand, within AO353_17325at 3830.815 kb on - strand, within AO353_17325at 3831.191 kb on + strand, within AO353_17330at 3831.387 kb on + strandat 3831.387 kb on + strandat 3831.387 kb on + strandat 3831.387 kb on + strandat 3831.387 kb on + strandat 3831.388 kb on - strandat 3831.390 kb on + strandat 3831.390 kb on + strandat 3831.390 kb on + strandat 3831.390 kb on + strandat 3831.391 kb on - strandat 3831.391 kb on - strandat 3831.391 kb on - strandat 3831.391 kb on - strandat 3831.435 kb on + strandat 3831.436 kb on - strandat 3831.515 kb on + strandat 3831.558 kb on + strandat 3831.558 kb on + strandat 3831.558 kb on + strandat 3831.559 kb on - strandat 3831.559 kb on - strandat 3831.559 kb on - strandat 3831.563 kb on + strandat 3831.564 kb on - strandat 3831.564 kb on - strandat 3831.564 kb on - strandat 3831.564 kb on - strandat 3831.564 kb on - strandat 3831.577 kb on + strandat 3831.577 kb on + strandat 3831.577 kb on + strandat 3831.577 kb on + strandat 3831.577 kb on + strandat 3831.577 kb on + strandat 3831.578 kb on - strandat 3831.578 kb on - strandat 3831.578 kb on - strandat 3831.578 kb on - strandat 3831.578 kb on - strandat 3831.578 kb on - strandat 3831.634 kb on + strand, within AO353_17335at 3831.635 kb on - strand, within AO353_17335at 3831.635 kb on - strand, within AO353_17335at 3831.766 kb on - strand, within AO353_17335at 3831.766 kb on - strand, within AO353_17335at 3831.844 kb on + strand, within AO353_17335at 3831.883 kb on + strand, within AO353_17335at 3831.884 kb on - strand, within AO353_17335at 3831.970 kb on + strand, within AO353_17335at 3832.072 kb on + strand, within AO353_17335at 3832.072 kb on + strand, within AO353_17335at 3832.072 kb on + strand, within AO353_17335at 3832.072 kb on + strand, within AO353_17335at 3832.072 kb on + strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.073 kb on - strand, within AO353_17335at 3832.105 kb on + strandat 3832.106 kb on - strandat 3832.106 kb on - strandat 3832.106 kb on - strandat 3832.246 kb on + strandat 3832.521 kb on - strand, within AO353_17340at 3832.714 kb on + strand, within AO353_17340at 3832.714 kb on + strand, within AO353_17340at 3832.714 kb on + strand, within AO353_17340at 3832.714 kb on + strand, within AO353_17340at 3832.715 kb on - strand, within AO353_17340at 3832.715 kb on - strand, within AO353_17340at 3832.758 kb on + strand, within AO353_17340at 3832.758 kb on + strand, within AO353_17340at 3832.758 kb on + strand, within AO353_17340at 3832.759 kb on - strand, within AO353_17340at 3832.759 kb on - strand, within AO353_17340at 3833.045 kb on + strandat 3833.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,830,654 + AO353_17325 0.63 +0.7
3,830,814 + AO353_17325 0.77 -3.5
3,830,815 - AO353_17325 0.77 -0.1
3,831,191 + AO353_17330 0.26 -1.6
3,831,387 + -0.0
3,831,387 + +2.2
3,831,387 + -0.5
3,831,387 + -1.0
3,831,387 + -1.6
3,831,388 - -1.0
3,831,390 + -2.0
3,831,390 + -1.0
3,831,390 + -2.0
3,831,390 + +0.8
3,831,391 - -1.6
3,831,391 - -1.0
3,831,391 - +1.4
3,831,391 - +1.7
3,831,435 + -2.0
3,831,436 - +3.9
3,831,515 + -0.0
3,831,558 + -1.6
3,831,558 + -2.3
3,831,558 + +0.2
3,831,559 - +1.0
3,831,559 - +3.4
3,831,559 - -1.4
3,831,563 + -0.3
3,831,564 - +1.9
3,831,564 - +1.7
3,831,564 - -2.8
3,831,564 - -0.2
3,831,564 - +1.6
3,831,577 + -2.0
3,831,577 + -2.3
3,831,577 + +1.2
3,831,577 + -1.6
3,831,577 + -0.7
3,831,577 + -0.0
3,831,578 - +0.5
3,831,578 - +1.7
3,831,578 - -0.0
3,831,578 - -2.3
3,831,578 - -1.6
3,831,578 - -2.0
3,831,634 + AO353_17335 0.11 +0.6
3,831,635 - AO353_17335 0.11 +1.5
3,831,635 - AO353_17335 0.11 -1.6
3,831,766 - AO353_17335 0.33 -0.0
3,831,766 - AO353_17335 0.33 -1.6
3,831,844 + AO353_17335 0.46 -1.0
3,831,883 + AO353_17335 0.53 +1.4
3,831,884 - AO353_17335 0.53 -0.0
3,831,970 + AO353_17335 0.67 -1.0
3,832,072 + AO353_17335 0.84 +2.2
3,832,072 + AO353_17335 0.84 +0.7
3,832,072 + AO353_17335 0.84 +0.6
3,832,072 + AO353_17335 0.84 +0.4
3,832,072 + AO353_17335 0.84 +1.3
3,832,073 - AO353_17335 0.85 -0.4
3,832,073 - AO353_17335 0.85 +0.9
3,832,073 - AO353_17335 0.85 +2.1
3,832,073 - AO353_17335 0.85 -1.6
3,832,073 - AO353_17335 0.85 +0.3
3,832,073 - AO353_17335 0.85 +2.0
3,832,073 - AO353_17335 0.85 +1.4
3,832,073 - AO353_17335 0.85 +0.6
3,832,073 - AO353_17335 0.85 -2.0
3,832,105 + -1.0
3,832,106 - +1.4
3,832,106 - -1.0
3,832,106 - +2.0
3,832,246 + -2.0
3,832,521 - AO353_17340 0.32 -0.0
3,832,714 + AO353_17340 0.56 -1.6
3,832,714 + AO353_17340 0.56 +2.0
3,832,714 + AO353_17340 0.56 -1.0
3,832,714 + AO353_17340 0.56 -0.3
3,832,715 - AO353_17340 0.56 -1.4
3,832,715 - AO353_17340 0.56 -0.8
3,832,758 + AO353_17340 0.61 +0.4
3,832,758 + AO353_17340 0.61 +0.7
3,832,758 + AO353_17340 0.61 -2.0
3,832,759 - AO353_17340 0.62 -2.2
3,832,759 - AO353_17340 0.62 -1.0
3,833,045 + -2.0
3,833,046 - -0.0

Or see this region's nucleotide sequence