Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14920

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14910 and AO353_14915 overlap by 4 nucleotidesAO353_14915 and AO353_14920 overlap by 4 nucleotidesAO353_14920 and AO353_14925 overlap by 4 nucleotides AO353_14910: AO353_14910 - pyridine nucleotide-disulfide oxidoreductase, at 3,298,150 to 3,299,418 _14910 AO353_14915: AO353_14915 - (2Fe-2S)-binding protein, at 3,299,415 to 3,299,651 _14915 AO353_14920: AO353_14920 - D-amino acid oxidase, at 3,299,648 to 3,300,763 _14920 AO353_14925: AO353_14925 - hydroxyproline-2-epimerase, at 3,300,760 to 3,301,695 _14925 Position (kb) 3299 3300 3301Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3298.651 kb on + strand, within AO353_14910at 3298.651 kb on + strand, within AO353_14910at 3298.652 kb on - strand, within AO353_14910at 3298.652 kb on - strand, within AO353_14910at 3298.652 kb on - strand, within AO353_14910at 3298.784 kb on + strand, within AO353_14910at 3298.785 kb on - strand, within AO353_14910at 3299.129 kb on + strand, within AO353_14910at 3299.129 kb on + strand, within AO353_14910at 3299.130 kb on - strand, within AO353_14910at 3299.223 kb on + strand, within AO353_14910at 3299.581 kb on + strand, within AO353_14915at 3299.581 kb on + strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.695 kb on - strandat 3299.695 kb on - strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.726 kb on - strandat 3299.726 kb on - strandat 3299.726 kb on - strandat 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.914 kb on - strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.336 kb on + strand, within AO353_14920at 3300.336 kb on + strand, within AO353_14920at 3300.337 kb on - strand, within AO353_14920at 3300.337 kb on - strand, within AO353_14920at 3300.405 kb on + strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.582 kb on + strand, within AO353_14920at 3300.583 kb on - strand, within AO353_14920at 3300.583 kb on - strand, within AO353_14920at 3300.583 kb on - strand, within AO353_14920at 3300.878 kb on + strand, within AO353_14925at 3300.879 kb on - strand, within AO353_14925at 3300.879 kb on - strand, within AO353_14925at 3300.879 kb on - strand, within AO353_14925at 3301.004 kb on + strand, within AO353_14925at 3301.005 kb on - strand, within AO353_14925at 3301.005 kb on - strand, within AO353_14925at 3301.143 kb on - strand, within AO353_14925at 3301.143 kb on - strand, within AO353_14925at 3301.394 kb on + strand, within AO353_14925at 3301.394 kb on + strand, within AO353_14925at 3301.395 kb on - strand, within AO353_14925at 3301.395 kb on - strand, within AO353_14925at 3301.395 kb on - strand, within AO353_14925at 3301.455 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.547 kb on - strand, within AO353_14925at 3301.547 kb on - strand, within AO353_14925at 3301.686 kb on + strandat 3301.686 kb on + strandat 3301.686 kb on + strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.728 kb on - strandat 3301.728 kb on - strandat 3301.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,298,651 + AO353_14910 0.39 -1.4
3,298,651 + AO353_14910 0.39 -1.8
3,298,652 - AO353_14910 0.40 +1.5
3,298,652 - AO353_14910 0.40 +0.9
3,298,652 - AO353_14910 0.40 -3.7
3,298,784 + AO353_14910 0.50 -0.1
3,298,785 - AO353_14910 0.50 -2.6
3,299,129 + AO353_14910 0.77 +0.2
3,299,129 + AO353_14910 0.77 -1.6
3,299,130 - AO353_14910 0.77 -1.8
3,299,223 + AO353_14910 0.85 +1.2
3,299,581 + AO353_14915 0.70 -0.5
3,299,581 + AO353_14915 0.70 +1.2
3,299,582 - AO353_14915 0.70 +0.2
3,299,582 - AO353_14915 0.70 +1.8
3,299,582 - AO353_14915 0.70 +1.0
3,299,582 - AO353_14915 0.70 -2.4
3,299,695 - +1.5
3,299,695 - +1.4
3,299,725 + -1.4
3,299,725 + -0.8
3,299,725 + -1.4
3,299,725 + -0.8
3,299,725 + -0.8
3,299,726 - -0.4
3,299,726 - +0.2
3,299,726 - +0.9
3,299,913 + AO353_14920 0.24 +2.5
3,299,913 + AO353_14920 0.24 -0.9
3,299,913 + AO353_14920 0.24 +1.3
3,299,913 + AO353_14920 0.24 +2.8
3,299,914 - AO353_14920 0.24 +1.9
3,300,075 + AO353_14920 0.38 -1.4
3,300,075 + AO353_14920 0.38 -0.8
3,300,075 + AO353_14920 0.38 -1.8
3,300,075 + AO353_14920 0.38 +0.2
3,300,076 - AO353_14920 0.38 +1.2
3,300,076 - AO353_14920 0.38 -0.8
3,300,076 - AO353_14920 0.38 -1.8
3,300,336 + AO353_14920 0.62 +1.7
3,300,336 + AO353_14920 0.62 +0.2
3,300,337 - AO353_14920 0.62 +0.2
3,300,337 - AO353_14920 0.62 -0.8
3,300,405 + AO353_14920 0.68 -1.4
3,300,406 - AO353_14920 0.68 +1.5
3,300,406 - AO353_14920 0.68 -0.8
3,300,406 - AO353_14920 0.68 +0.2
3,300,406 - AO353_14920 0.68 +1.3
3,300,406 - AO353_14920 0.68 -0.7
3,300,582 + AO353_14920 0.84 -0.8
3,300,583 - AO353_14920 0.84 -1.4
3,300,583 - AO353_14920 0.84 -3.5
3,300,583 - AO353_14920 0.84 -0.5
3,300,878 + AO353_14925 0.13 -2.1
3,300,879 - AO353_14925 0.13 -1.4
3,300,879 - AO353_14925 0.13 +0.3
3,300,879 - AO353_14925 0.13 +0.6
3,301,004 + AO353_14925 0.26 +2.5
3,301,005 - AO353_14925 0.26 -0.8
3,301,005 - AO353_14925 0.26 +2.6
3,301,143 - AO353_14925 0.41 +0.2
3,301,143 - AO353_14925 0.41 -0.2
3,301,394 + AO353_14925 0.68 +2.2
3,301,394 + AO353_14925 0.68 +3.4
3,301,395 - AO353_14925 0.68 -1.4
3,301,395 - AO353_14925 0.68 -0.8
3,301,395 - AO353_14925 0.68 -1.4
3,301,455 + AO353_14925 0.74 -0.8
3,301,546 + AO353_14925 0.84 -2.6
3,301,546 + AO353_14925 0.84 -0.8
3,301,546 + AO353_14925 0.84 +0.2
3,301,546 + AO353_14925 0.84 -1.4
3,301,546 + AO353_14925 0.84 -2.1
3,301,546 + AO353_14925 0.84 +0.6
3,301,547 - AO353_14925 0.84 -2.4
3,301,547 - AO353_14925 0.84 +0.8
3,301,686 + +0.6
3,301,686 + -2.1
3,301,686 + +0.2
3,301,687 - -2.6
3,301,687 - +0.2
3,301,687 - +0.9
3,301,687 - +2.5
3,301,687 - +1.8
3,301,727 + -1.4
3,301,727 + -1.4
3,301,727 + -1.8
3,301,727 + -2.1
3,301,727 + +0.2
3,301,728 - -0.8
3,301,728 - +0.2
3,301,728 - +0.2

Or see this region's nucleotide sequence