Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14910

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14905 and AO353_14910 are separated by 28 nucleotidesAO353_14910 and AO353_14915 overlap by 4 nucleotidesAO353_14915 and AO353_14920 overlap by 4 nucleotides AO353_14905: AO353_14905 - AraC family transcriptional regulator, at 3,297,375 to 3,298,121 _14905 AO353_14910: AO353_14910 - pyridine nucleotide-disulfide oxidoreductase, at 3,298,150 to 3,299,418 _14910 AO353_14915: AO353_14915 - (2Fe-2S)-binding protein, at 3,299,415 to 3,299,651 _14915 AO353_14920: AO353_14920 - D-amino acid oxidase, at 3,299,648 to 3,300,763 _14920 Position (kb) 3298 3299 3300Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3297.217 kb on + strandat 3297.217 kb on + strandat 3297.288 kb on + strandat 3297.288 kb on + strandat 3297.288 kb on + strandat 3297.288 kb on + strandat 3297.288 kb on + strandat 3297.288 kb on + strandat 3297.289 kb on - strandat 3297.289 kb on - strandat 3297.289 kb on - strandat 3297.289 kb on - strandat 3297.289 kb on - strandat 3297.289 kb on - strandat 3297.457 kb on + strand, within AO353_14905at 3297.646 kb on + strand, within AO353_14905at 3297.646 kb on + strand, within AO353_14905at 3297.688 kb on + strand, within AO353_14905at 3297.689 kb on - strand, within AO353_14905at 3297.689 kb on - strand, within AO353_14905at 3297.724 kb on + strand, within AO353_14905at 3297.725 kb on - strand, within AO353_14905at 3297.761 kb on + strand, within AO353_14905at 3297.815 kb on - strand, within AO353_14905at 3297.861 kb on + strand, within AO353_14905at 3297.861 kb on + strand, within AO353_14905at 3297.861 kb on + strand, within AO353_14905at 3297.861 kb on + strand, within AO353_14905at 3297.861 kb on + strand, within AO353_14905at 3297.883 kb on + strand, within AO353_14905at 3297.883 kb on + strand, within AO353_14905at 3297.883 kb on + strand, within AO353_14905at 3297.883 kb on + strand, within AO353_14905at 3297.883 kb on + strand, within AO353_14905at 3297.884 kb on - strand, within AO353_14905at 3297.884 kb on - strand, within AO353_14905at 3297.884 kb on - strand, within AO353_14905at 3297.884 kb on - strand, within AO353_14905at 3297.884 kb on - strand, within AO353_14905at 3297.884 kb on - strand, within AO353_14905at 3297.991 kb on + strand, within AO353_14905at 3298.052 kb on + strandat 3298.052 kb on + strandat 3298.052 kb on + strandat 3298.053 kb on - strandat 3298.053 kb on - strandat 3298.053 kb on - strandat 3298.074 kb on + strandat 3298.074 kb on + strandat 3298.074 kb on + strandat 3298.075 kb on - strandat 3298.075 kb on - strandat 3298.151 kb on + strandat 3298.151 kb on + strandat 3298.151 kb on + strandat 3298.156 kb on + strandat 3298.156 kb on + strandat 3298.157 kb on - strandat 3298.157 kb on - strandat 3298.157 kb on - strandat 3298.157 kb on - strandat 3298.157 kb on - strandat 3298.262 kb on + strandat 3298.327 kb on - strand, within AO353_14910at 3298.595 kb on + strand, within AO353_14910at 3298.595 kb on + strand, within AO353_14910at 3298.595 kb on + strand, within AO353_14910at 3298.595 kb on + strand, within AO353_14910at 3298.595 kb on + strand, within AO353_14910at 3298.596 kb on - strand, within AO353_14910at 3298.596 kb on - strand, within AO353_14910at 3298.596 kb on - strand, within AO353_14910at 3298.611 kb on + strand, within AO353_14910at 3298.651 kb on + strand, within AO353_14910at 3298.651 kb on + strand, within AO353_14910at 3298.652 kb on - strand, within AO353_14910at 3298.652 kb on - strand, within AO353_14910at 3298.652 kb on - strand, within AO353_14910at 3298.784 kb on + strand, within AO353_14910at 3298.785 kb on - strand, within AO353_14910at 3299.129 kb on + strand, within AO353_14910at 3299.129 kb on + strand, within AO353_14910at 3299.130 kb on - strand, within AO353_14910at 3299.223 kb on + strand, within AO353_14910at 3299.581 kb on + strand, within AO353_14915at 3299.581 kb on + strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.582 kb on - strand, within AO353_14915at 3299.695 kb on - strandat 3299.695 kb on - strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.725 kb on + strandat 3299.726 kb on - strandat 3299.726 kb on - strandat 3299.726 kb on - strandat 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.914 kb on - strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.336 kb on + strand, within AO353_14920at 3300.336 kb on + strand, within AO353_14920at 3300.337 kb on - strand, within AO353_14920at 3300.337 kb on - strand, within AO353_14920at 3300.405 kb on + strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,297,217 + +1.8
3,297,217 + -2.4
3,297,288 + +0.2
3,297,288 + -0.8
3,297,288 + -0.1
3,297,288 + -0.8
3,297,288 + +0.2
3,297,288 + +2.4
3,297,289 - +0.2
3,297,289 - +2.8
3,297,289 - -0.2
3,297,289 - -0.8
3,297,289 - +1.5
3,297,289 - -3.4
3,297,457 + AO353_14905 0.11 -0.7
3,297,646 + AO353_14905 0.36 +2.4
3,297,646 + AO353_14905 0.36 -2.6
3,297,688 + AO353_14905 0.42 -1.4
3,297,689 - AO353_14905 0.42 -0.8
3,297,689 - AO353_14905 0.42 -2.4
3,297,724 + AO353_14905 0.47 -1.8
3,297,725 - AO353_14905 0.47 -3.0
3,297,761 + AO353_14905 0.52 -1.8
3,297,815 - AO353_14905 0.59 +0.2
3,297,861 + AO353_14905 0.65 +0.2
3,297,861 + AO353_14905 0.65 -0.1
3,297,861 + AO353_14905 0.65 -2.8
3,297,861 + AO353_14905 0.65 +3.5
3,297,861 + AO353_14905 0.65 +1.9
3,297,883 + AO353_14905 0.68 +0.8
3,297,883 + AO353_14905 0.68 +0.2
3,297,883 + AO353_14905 0.68 +0.9
3,297,883 + AO353_14905 0.68 -1.0
3,297,883 + AO353_14905 0.68 -2.1
3,297,884 - AO353_14905 0.68 -1.4
3,297,884 - AO353_14905 0.68 -1.4
3,297,884 - AO353_14905 0.68 -1.8
3,297,884 - AO353_14905 0.68 +1.5
3,297,884 - AO353_14905 0.68 +1.5
3,297,884 - AO353_14905 0.68 +1.2
3,297,991 + AO353_14905 0.82 +0.2
3,298,052 + -1.4
3,298,052 + +0.5
3,298,052 + -1.4
3,298,053 - -0.8
3,298,053 - -2.1
3,298,053 - -1.4
3,298,074 + -1.4
3,298,074 + -3.6
3,298,074 + -2.1
3,298,075 - -1.4
3,298,075 - -1.8
3,298,151 + +2.0
3,298,151 + +1.2
3,298,151 + -1.4
3,298,156 + +0.2
3,298,156 + +0.9
3,298,157 - +1.9
3,298,157 - +0.5
3,298,157 - +0.4
3,298,157 - -1.4
3,298,157 - -0.4
3,298,262 + -1.4
3,298,327 - AO353_14910 0.14 +0.6
3,298,595 + AO353_14910 0.35 -2.6
3,298,595 + AO353_14910 0.35 -0.0
3,298,595 + AO353_14910 0.35 -1.4
3,298,595 + AO353_14910 0.35 +0.2
3,298,595 + AO353_14910 0.35 +0.2
3,298,596 - AO353_14910 0.35 -0.4
3,298,596 - AO353_14910 0.35 +2.2
3,298,596 - AO353_14910 0.35 -0.9
3,298,611 + AO353_14910 0.36 +2.2
3,298,651 + AO353_14910 0.39 -1.4
3,298,651 + AO353_14910 0.39 -1.8
3,298,652 - AO353_14910 0.40 +1.5
3,298,652 - AO353_14910 0.40 +0.9
3,298,652 - AO353_14910 0.40 -3.7
3,298,784 + AO353_14910 0.50 -0.1
3,298,785 - AO353_14910 0.50 -2.6
3,299,129 + AO353_14910 0.77 +0.2
3,299,129 + AO353_14910 0.77 -1.6
3,299,130 - AO353_14910 0.77 -1.8
3,299,223 + AO353_14910 0.85 +1.2
3,299,581 + AO353_14915 0.70 -0.5
3,299,581 + AO353_14915 0.70 +1.2
3,299,582 - AO353_14915 0.70 +0.2
3,299,582 - AO353_14915 0.70 +1.8
3,299,582 - AO353_14915 0.70 +1.0
3,299,582 - AO353_14915 0.70 -2.4
3,299,695 - +1.5
3,299,695 - +1.4
3,299,725 + -1.4
3,299,725 + -0.8
3,299,725 + -1.4
3,299,725 + -0.8
3,299,725 + -0.8
3,299,726 - -0.4
3,299,726 - +0.2
3,299,726 - +0.9
3,299,913 + AO353_14920 0.24 +2.5
3,299,913 + AO353_14920 0.24 -0.9
3,299,913 + AO353_14920 0.24 +1.3
3,299,913 + AO353_14920 0.24 +2.8
3,299,914 - AO353_14920 0.24 +1.9
3,300,075 + AO353_14920 0.38 -1.4
3,300,075 + AO353_14920 0.38 -0.8
3,300,075 + AO353_14920 0.38 -1.8
3,300,075 + AO353_14920 0.38 +0.2
3,300,076 - AO353_14920 0.38 +1.2
3,300,076 - AO353_14920 0.38 -0.8
3,300,076 - AO353_14920 0.38 -1.8
3,300,336 + AO353_14920 0.62 +1.7
3,300,336 + AO353_14920 0.62 +0.2
3,300,337 - AO353_14920 0.62 +0.2
3,300,337 - AO353_14920 0.62 -0.8
3,300,405 + AO353_14920 0.68 -1.4
3,300,406 - AO353_14920 0.68 +1.5
3,300,406 - AO353_14920 0.68 -0.8
3,300,406 - AO353_14920 0.68 +0.2
3,300,406 - AO353_14920 0.68 +1.3
3,300,406 - AO353_14920 0.68 -0.7

Or see this region's nucleotide sequence