Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10585

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10580 and AO353_10585 are separated by 365 nucleotidesAO353_10585 and AO353_10590 are separated by 63 nucleotidesAO353_10590 and AO353_10595 are separated by 10 nucleotides AO353_10580: AO353_10580 - ATPase, at 2,319,741 to 2,322,047 _10580 AO353_10585: AO353_10585 - glycerol acyltransferase, at 2,322,413 to 2,323,183 _10585 AO353_10590: AO353_10590 - histidinol phosphatase, at 2,323,247 to 2,323,780 _10590 AO353_10595: AO353_10595 - glycine--tRNA ligase subunit beta, at 2,323,791 to 2,325,845 _10595 Position (kb) 2322 2323 2324Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2321.466 kb on + strand, within AO353_10580at 2321.466 kb on + strand, within AO353_10580at 2321.466 kb on + strand, within AO353_10580at 2321.518 kb on + strand, within AO353_10580at 2321.518 kb on + strand, within AO353_10580at 2321.518 kb on + strand, within AO353_10580at 2321.518 kb on + strand, within AO353_10580at 2321.518 kb on + strand, within AO353_10580at 2321.519 kb on - strand, within AO353_10580at 2321.519 kb on - strand, within AO353_10580at 2321.519 kb on - strand, within AO353_10580at 2321.519 kb on - strand, within AO353_10580at 2321.581 kb on - strand, within AO353_10580at 2321.581 kb on - strand, within AO353_10580at 2321.642 kb on + strand, within AO353_10580at 2321.643 kb on - strand, within AO353_10580at 2321.766 kb on + strand, within AO353_10580at 2321.766 kb on + strand, within AO353_10580at 2321.766 kb on + strand, within AO353_10580at 2321.767 kb on - strand, within AO353_10580at 2321.767 kb on - strand, within AO353_10580at 2321.767 kb on - strand, within AO353_10580at 2321.767 kb on - strand, within AO353_10580at 2321.767 kb on - strand, within AO353_10580at 2321.852 kb on + strandat 2321.852 kb on + strandat 2321.852 kb on + strandat 2321.853 kb on - strandat 2321.853 kb on - strandat 2321.853 kb on - strandat 2321.853 kb on - strandat 2321.853 kb on - strandat 2321.853 kb on - strandat 2321.853 kb on - strandat 2321.869 kb on + strandat 2322.008 kb on + strandat 2322.008 kb on + strandat 2322.009 kb on - strandat 2322.109 kb on + strandat 2322.109 kb on + strandat 2322.110 kb on - strandat 2322.110 kb on - strandat 2322.145 kb on + strandat 2322.145 kb on + strandat 2322.145 kb on + strandat 2322.145 kb on + strandat 2322.145 kb on + strandat 2322.145 kb on + strandat 2322.146 kb on - strandat 2322.146 kb on - strandat 2322.253 kb on + strandat 2322.253 kb on + strandat 2322.253 kb on + strandat 2322.254 kb on - strandat 2322.271 kb on + strandat 2322.300 kb on + strandat 2322.344 kb on + strandat 2322.391 kb on + strandat 2323.198 kb on - strandat 2323.198 kb on - strandat 2323.201 kb on - strandat 2323.201 kb on - strandat 2323.201 kb on - strandat 2323.201 kb on - strandat 2323.249 kb on - strandat 2323.259 kb on - strandat 2323.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,321,466 + AO353_10580 0.75 +1.7
2,321,466 + AO353_10580 0.75 +0.0
2,321,466 + AO353_10580 0.75 -0.0
2,321,518 + AO353_10580 0.77 -2.1
2,321,518 + AO353_10580 0.77 +0.8
2,321,518 + AO353_10580 0.77 +1.7
2,321,518 + AO353_10580 0.77 -0.5
2,321,518 + AO353_10580 0.77 -1.5
2,321,519 - AO353_10580 0.77 +2.0
2,321,519 - AO353_10580 0.77 -2.1
2,321,519 - AO353_10580 0.77 -1.8
2,321,519 - AO353_10580 0.77 -2.1
2,321,581 - AO353_10580 0.80 -0.4
2,321,581 - AO353_10580 0.80 +2.4
2,321,642 + AO353_10580 0.82 -2.3
2,321,643 - AO353_10580 0.82 -0.5
2,321,766 + AO353_10580 0.88 +1.0
2,321,766 + AO353_10580 0.88 -2.3
2,321,766 + AO353_10580 0.88 -0.1
2,321,767 - AO353_10580 0.88 +2.5
2,321,767 - AO353_10580 0.88 -0.2
2,321,767 - AO353_10580 0.88 -0.7
2,321,767 - AO353_10580 0.88 +0.4
2,321,767 - AO353_10580 0.88 +3.8
2,321,852 + +0.2
2,321,852 + +0.7
2,321,852 + +1.8
2,321,853 - -1.1
2,321,853 - +2.3
2,321,853 - -1.5
2,321,853 - -2.8
2,321,853 - +0.1
2,321,853 - -1.1
2,321,853 - -0.4
2,321,869 + -2.3
2,322,008 + -1.1
2,322,008 + +0.5
2,322,009 - -1.5
2,322,109 + +1.5
2,322,109 + +0.5
2,322,110 - -1.1
2,322,110 - -1.6
2,322,145 + +0.9
2,322,145 + -0.1
2,322,145 + -0.5
2,322,145 + -0.5
2,322,145 + +1.2
2,322,145 + +0.7
2,322,146 - -2.1
2,322,146 - -0.0
2,322,253 + +2.5
2,322,253 + -2.5
2,322,253 + -2.3
2,322,254 - -1.1
2,322,271 + +1.7
2,322,300 + +2.5
2,322,344 + -1.8
2,322,391 + -1.8
2,323,198 - +3.0
2,323,198 - -1.5
2,323,201 - +2.3
2,323,201 - +0.9
2,323,201 - +0.5
2,323,201 - -0.5
2,323,249 - +0.5
2,323,259 - -3.3
2,323,259 - -1.8

Or see this region's nucleotide sequence