Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09880

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_09870 and AO353_09875 are separated by 214 nucleotidesAO353_09875 and AO353_09880 are separated by 367 nucleotidesAO353_09880 and AO353_09885 are separated by 180 nucleotides AO353_09870: AO353_09870 - peptidase M23, at 2,154,731 to 2,155,627 _09870 AO353_09875: AO353_09875 - hypothetical protein, at 2,155,842 to 2,156,231 _09875 AO353_09880: AO353_09880 - chemotaxis protein CheY, at 2,156,599 to 2,157,549 _09880 AO353_09885: AO353_09885 - transcriptional regulator PhoU, at 2,157,730 to 2,158,491 _09885 Position (kb) 2156 2157 2158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.665 kb on - strandat 2155.665 kb on - strandat 2155.665 kb on - strandat 2155.686 kb on + strandat 2155.687 kb on - strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.858 kb on + strandat 2155.859 kb on - strandat 2155.933 kb on + strand, within AO353_09875at 2155.933 kb on + strand, within AO353_09875at 2155.933 kb on + strand, within AO353_09875at 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.252 kb on + strandat 2156.252 kb on + strandat 2156.252 kb on + strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.381 kb on + strandat 2156.381 kb on + strandat 2156.400 kb on + strandat 2156.400 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.513 kb on + strandat 2156.514 kb on - strandat 2156.514 kb on - strandat 2156.571 kb on + strandat 2156.572 kb on - strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.597 kb on - strandat 2156.597 kb on - strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.601 kb on - strandat 2156.601 kb on - strandat 2156.612 kb on - strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.753 kb on + strand, within AO353_09880at 2156.753 kb on + strand, within AO353_09880at 2156.753 kb on + strand, within AO353_09880at 2156.898 kb on + strand, within AO353_09880at 2156.898 kb on + strand, within AO353_09880at 2156.899 kb on - strand, within AO353_09880at 2156.899 kb on - strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2157.236 kb on + strand, within AO353_09880at 2157.236 kb on + strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.295 kb on - strand, within AO353_09880at 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.507 kb on + strandat 2157.508 kb on - strandat 2157.560 kb on + strandat 2157.561 kb on - strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.580 kb on + strandat 2157.580 kb on + strandat 2157.580 kb on + strandat 2157.581 kb on - strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.718 kb on - strandat 2157.718 kb on - strandat 2157.718 kb on - strandat 2157.718 kb on - strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.735 kb on + strandat 2157.735 kb on + strandat 2157.735 kb on + strandat 2157.735 kb on + strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.759 kb on + strandat 2157.842 kb on + strand, within AO353_09885at 2157.842 kb on + strand, within AO353_09885at 2157.842 kb on + strand, within AO353_09885at 2157.842 kb on + strand, within AO353_09885at 2157.843 kb on - strand, within AO353_09885at 2157.843 kb on - strandat 2157.953 kb on + strand, within AO353_09885at 2157.983 kb on + strand, within AO353_09885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
2,155,627 + -1.5
2,155,627 + +0.2
2,155,627 + -2.3
2,155,627 + +0.5
2,155,627 + +1.2
2,155,627 + -1.5
2,155,627 + -0.1
2,155,627 + -0.5
2,155,627 + -0.5
2,155,628 - +2.4
2,155,628 - -0.8
2,155,628 - -1.1
2,155,628 - +2.8
2,155,628 - -1.5
2,155,628 - +0.7
2,155,628 - +1.9
2,155,628 - -1.5
2,155,628 - +1.3
2,155,628 - -0.1
2,155,628 - +0.1
2,155,628 - -0.7
2,155,628 - +0.5
2,155,628 - +1.2
2,155,628 - -0.8
2,155,628 - -2.1
2,155,665 - +2.5
2,155,665 - +2.3
2,155,665 - +3.9
2,155,686 + -1.1
2,155,687 - -0.3
2,155,843 + +0.7
2,155,843 + +4.3
2,155,843 + +3.7
2,155,843 + -2.5
2,155,843 + +1.1
2,155,844 - -0.0
2,155,844 - +4.1
2,155,844 - +3.6
2,155,844 - -1.5
2,155,844 - +0.5
2,155,844 - -0.5
2,155,858 + -0.5
2,155,859 - -2.1
2,155,933 + AO353_09875 0.23 +2.4
2,155,933 + AO353_09875 0.23 -1.1
2,155,933 + AO353_09875 0.23 -0.5
2,156,237 + +1.8
2,156,237 + -1.5
2,156,237 + +0.8
2,156,237 + -1.4
2,156,237 + -0.5
2,156,237 + -2.1
2,156,237 + -2.7
2,156,237 + +0.5
2,156,237 + -1.8
2,156,252 + +0.5
2,156,252 + -2.1
2,156,252 + +1.2
2,156,253 - -0.9
2,156,253 - +0.2
2,156,253 - -0.3
2,156,253 - -2.3
2,156,253 - -0.2
2,156,253 - -0.5
2,156,381 + +1.3
2,156,381 + -2.5
2,156,400 + -2.1
2,156,400 + -0.5
2,156,408 + +2.7
2,156,408 + -0.5
2,156,408 + +2.5
2,156,408 + +1.2
2,156,408 + +0.3
2,156,408 + +3.5
2,156,408 + +0.5
2,156,408 + +0.5
2,156,408 + -2.5
2,156,408 + -1.5
2,156,408 + -0.5
2,156,408 + -1.5
2,156,408 + +1.5
2,156,408 + +2.2
2,156,408 + +0.0
2,156,408 + -1.5
2,156,409 - -2.1
2,156,409 - -1.5
2,156,409 - +0.5
2,156,409 - +0.7
2,156,409 - -0.5
2,156,409 - +1.3
2,156,409 - +1.1
2,156,409 - +1.0
2,156,409 - +1.5
2,156,409 - -1.5
2,156,409 - +4.3
2,156,409 - -0.9
2,156,409 - -0.5
2,156,409 - +2.6
2,156,409 - -0.5
2,156,409 - +0.8
2,156,409 - -2.3
2,156,497 - -0.5
2,156,497 - +0.5
2,156,497 - -0.5
2,156,497 - -0.5
2,156,497 - +1.9
2,156,497 - +2.8
2,156,497 - -0.3
2,156,497 - +0.8
2,156,497 - +2.6
2,156,497 - -0.5
2,156,513 + +2.5
2,156,514 - -0.7
2,156,514 - +0.0
2,156,571 + -0.5
2,156,572 - -1.1
2,156,596 + -2.1
2,156,596 + -3.4
2,156,596 + +0.6
2,156,596 + +0.5
2,156,596 + -0.5
2,156,596 + -1.8
2,156,596 + -1.1
2,156,596 + +0.5
2,156,596 + -1.5
2,156,597 - -0.5
2,156,597 - -0.5
2,156,600 + -3.1
2,156,600 + -0.5
2,156,600 + +3.6
2,156,600 + -1.5
2,156,600 + -1.8
2,156,600 + +0.5
2,156,600 + -2.3
2,156,600 + -0.4
2,156,601 - -2.7
2,156,601 - +1.2
2,156,612 - +0.2
2,156,657 + -0.3
2,156,657 + -1.5
2,156,657 + +2.8
2,156,657 + -2.1
2,156,657 + -1.1
2,156,657 + +0.7
2,156,657 + +0.5
2,156,657 + -2.3
2,156,657 + -2.1
2,156,657 + -0.5
2,156,658 - +0.2
2,156,658 - +0.9
2,156,658 - +0.6
2,156,658 - -0.0
2,156,658 - +2.6
2,156,658 - -1.5
2,156,658 - -1.1
2,156,658 - +0.5
2,156,658 - +2.2
2,156,658 - -0.5
2,156,658 - -0.5
2,156,658 - +1.8
2,156,658 - -0.8
2,156,658 - +0.1
2,156,658 - +4.2
2,156,753 + AO353_09880 0.16 -3.8
2,156,753 + AO353_09880 0.16 +2.1
2,156,753 + AO353_09880 0.16 -1.8
2,156,898 + AO353_09880 0.31 -3.0
2,156,898 + AO353_09880 0.31 +0.5
2,156,899 - AO353_09880 0.32 -0.3
2,156,899 - AO353_09880 0.32 +2.5
2,156,914 + AO353_09880 0.33 +0.5
2,156,914 + AO353_09880 0.33 +0.5
2,156,914 + AO353_09880 0.33 +0.9
2,156,914 + AO353_09880 0.33 -1.1
2,156,914 + AO353_09880 0.33 +3.3
2,156,914 + AO353_09880 0.33 +2.1
2,156,914 + AO353_09880 0.33 -0.5
2,156,914 + AO353_09880 0.33 -0.5
2,156,914 + AO353_09880 0.33 +0.7
2,156,914 + AO353_09880 0.33 +1.3
2,156,914 + AO353_09880 0.33 +2.1
2,156,915 - AO353_09880 0.33 -1.8
2,156,915 - AO353_09880 0.33 +1.2
2,156,915 - AO353_09880 0.33 -1.1
2,156,915 - AO353_09880 0.33 -0.5
2,156,915 - AO353_09880 0.33 +1.1
2,157,236 + AO353_09880 0.67 +2.3
2,157,236 + AO353_09880 0.67 -1.5
2,157,237 - AO353_09880 0.67 +0.1
2,157,237 - AO353_09880 0.67 -1.6
2,157,237 - AO353_09880 0.67 +1.1
2,157,237 - AO353_09880 0.67 -2.7
2,157,295 - AO353_09880 0.73 +0.9
2,157,473 + +0.8
2,157,473 + +0.4
2,157,473 + +1.8
2,157,473 + +0.2
2,157,473 + +2.8
2,157,473 + +1.2
2,157,473 + +2.3
2,157,473 + +0.5
2,157,473 + -1.0
2,157,473 + +1.0
2,157,473 + -2.1
2,157,474 - +3.3
2,157,474 - -2.5
2,157,474 - -0.5
2,157,474 - +0.5
2,157,474 - -1.1
2,157,474 - -1.8
2,157,507 + -0.5
2,157,508 - +2.3
2,157,560 + -1.1
2,157,561 - +3.5
2,157,562 + +0.5
2,157,562 + +0.5
2,157,562 + -0.1
2,157,562 + +1.6
2,157,562 + -0.7
2,157,562 + -1.5
2,157,562 + +0.5
2,157,562 + -1.1
2,157,562 + +3.2
2,157,562 + -2.8
2,157,562 + -2.5
2,157,562 + -1.5
2,157,562 + -1.8
2,157,562 + +2.5
2,157,563 - -2.5
2,157,563 - -0.5
2,157,563 - +0.5
2,157,563 - -0.5
2,157,563 - +3.8
2,157,563 - +1.3
2,157,563 - +3.1
2,157,563 - +0.5
2,157,563 - +1.9
2,157,580 + -2.7
2,157,580 + -0.5
2,157,580 + +0.9
2,157,581 - +0.5
2,157,717 + +1.9
2,157,717 + -0.5
2,157,717 + -0.5
2,157,717 + +0.1
2,157,717 + -0.3
2,157,717 + -0.5
2,157,717 + -0.5
2,157,718 - +1.6
2,157,718 - -0.2
2,157,718 - -0.5
2,157,718 - -2.1
2,157,731 + +2.7
2,157,731 + +0.3
2,157,731 + -2.3
2,157,731 + +3.1
2,157,731 + -2.3
2,157,731 + +3.5
2,157,731 + +1.4
2,157,731 + +0.2
2,157,731 + -2.3
2,157,731 + -0.4
2,157,731 + +0.5
2,157,731 + -1.1
2,157,731 + -2.7
2,157,731 + -0.1
2,157,731 + +0.5
2,157,731 + -2.1
2,157,732 - -0.8
2,157,732 - -0.5
2,157,732 - +0.3
2,157,732 - -0.5
2,157,732 - -0.5
2,157,732 - +0.2
2,157,732 - -1.5
2,157,732 - +0.5
2,157,732 - -0.7
2,157,732 - -0.5
2,157,732 - -0.8
2,157,732 - +2.9
2,157,732 - -1.5
2,157,732 - +2.3
2,157,732 - -1.8
2,157,732 - -1.1
2,157,732 - -2.5
2,157,732 - +2.1
2,157,732 - +2.9
2,157,732 - +0.5
2,157,732 - -0.5
2,157,735 + -1.5
2,157,735 + -2.1
2,157,735 + +1.5
2,157,735 + -4.2
2,157,736 - +3.4
2,157,736 - +2.9
2,157,736 - -0.3
2,157,736 - -1.1
2,157,736 - -0.5
2,157,736 - +1.5
2,157,736 - -1.1
2,157,759 + -0.5
2,157,842 + AO353_09885 0.15 -0.3
2,157,842 + AO353_09885 0.15 +0.5
2,157,842 + AO353_09885 0.15 -1.1
2,157,842 + AO353_09885 0.15 -0.5
2,157,843 - AO353_09885 0.15 -1.1
2,157,843 - -0.5
2,157,953 + AO353_09885 0.29 -0.5
2,157,983 + AO353_09885 0.33 +1.6

Or see this region's nucleotide sequence