Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04565 and AO353_04570 overlap by 1 nucleotides AO353_04570 and AO353_04575 are separated by 162 nucleotides AO353_04575 and AO353_04580 are separated by 87 nucleotides AO353_04580 and AO353_04585 are separated by 39 nucleotides
AO353_04565: AO353_04565 - nucleoid-associated protein, at 986,852 to 987,856
_04565
AO353_04570: AO353_04570 - glutaredoxin, at 987,856 to 988,206
_04570
AO353_04575: AO353_04575 - glutathione S-transferase, at 988,369 to 989,304
_04575
AO353_04580: AO353_04580 - GIY-YIG nuclease, at 989,392 to 989,712
_04580
AO353_04585: AO353_04585 - ketosteroid isomerase, at 989,752 to 990,222
_04585
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 987.401 kb on + strand, within AO353_04565 at 987.401 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.632 kb on + strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.779 kb on + strand at 987.869 kb on + strand at 987.869 kb on + strand at 987.870 kb on - strand at 987.870 kb on - strand at 987.911 kb on - strand, within AO353_04570 at 987.998 kb on - strand, within AO353_04570 at 987.998 kb on - strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.133 kb on + strand, within AO353_04570 at 988.204 kb on + strand at 988.204 kb on + strand at 988.204 kb on + strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.259 kb on + strand at 988.260 kb on - strand at 988.288 kb on + strand at 988.288 kb on + strand at 988.288 kb on + strand at 988.289 kb on - strand at 988.289 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.483 kb on + strand, within AO353_04575 at 988.483 kb on + strand, within AO353_04575 at 988.483 kb on + strand, within AO353_04575 at 988.484 kb on - strand, within AO353_04575 at 988.502 kb on + strand, within AO353_04575 at 988.503 kb on - strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.340 kb on + strand at 989.363 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.402 kb on - strand at 989.491 kb on - strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.511 kb on - strand, within AO353_04580 at 989.556 kb on + strand, within AO353_04580 at 989.609 kb on + strand, within AO353_04580 at 989.609 kb on + strand, within AO353_04580 at 989.610 kb on - strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.730 kb on + strand at 989.731 kb on - strand at 989.750 kb on + strand at 989.751 kb on - strand at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 990.141 kb on - strand, within AO353_04585 at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.273 kb on + strand at 990.274 kb on - strand at 990.297 kb on - strand at 990.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 987,401 + AO353_04565 0.55 -2.7 987,401 + AO353_04565 0.55 -0.9 987,545 + AO353_04565 0.69 +0.1 987,545 + AO353_04565 0.69 +0.1 987,545 + AO353_04565 0.69 +0.1 987,632 + AO353_04565 0.78 -0.9 987,633 - AO353_04565 0.78 -0.9 987,633 - AO353_04565 0.78 -0.9 987,633 - AO353_04565 0.78 -2.3 987,633 - AO353_04565 0.78 +0.1 987,779 + -1.9 987,869 + -0.7 987,869 + -0.3 987,870 - +0.1 987,870 - -2.3 987,911 - AO353_04570 0.16 -0.9 987,998 - AO353_04570 0.40 -0.9 987,998 - AO353_04570 0.40 +1.1 988,108 + AO353_04570 0.72 +2.6 988,108 + AO353_04570 0.72 +1.1 988,108 + AO353_04570 0.72 -1.9 988,108 + AO353_04570 0.72 -1.5 988,108 + AO353_04570 0.72 -1.8 988,108 + AO353_04570 0.72 +1.8 988,108 + AO353_04570 0.72 +0.9 988,108 + AO353_04570 0.72 +0.7 988,108 + AO353_04570 0.72 +1.3 988,108 + AO353_04570 0.72 -1.9 988,109 - AO353_04570 0.72 -1.5 988,109 - AO353_04570 0.72 -0.9 988,109 - AO353_04570 0.72 -1.9 988,109 - AO353_04570 0.72 -0.9 988,133 + AO353_04570 0.79 -1.9 988,204 + -1.5 988,204 + +1.9 988,204 + +0.5 988,205 - +1.9 988,205 - +0.5 988,205 - -0.9 988,205 - -0.9 988,205 - -0.9 988,205 - -2.3 988,205 - +0.4 988,205 - -2.3 988,205 - +0.4 988,205 - +0.1 988,205 - +1.4 988,205 - -2.7 988,259 + -1.5 988,260 - +0.1 988,288 + +0.1 988,288 + -1.9 988,288 + -0.9 988,289 - +0.6 988,289 - -3.5 988,298 - -0.9 988,298 - -1.9 988,298 - +0.1 988,298 - +0.4 988,483 + AO353_04575 0.12 +0.8 988,483 + AO353_04575 0.12 +2.2 988,483 + AO353_04575 0.12 +2.2 988,484 - AO353_04575 0.12 -0.9 988,502 + AO353_04575 0.14 -0.9 988,503 - AO353_04575 0.14 -2.3 988,522 + AO353_04575 0.16 -2.7 988,522 + AO353_04575 0.16 -0.9 988,522 + AO353_04575 0.16 +0.6 988,522 + AO353_04575 0.16 +1.8 988,522 + AO353_04575 0.16 -1.9 988,522 + AO353_04575 0.16 +0.1 988,522 + AO353_04575 0.16 -1.1 988,522 + AO353_04575 0.16 -0.7 988,523 - AO353_04575 0.16 -1.9 988,523 - AO353_04575 0.16 -1.5 988,523 - AO353_04575 0.16 +0.9 988,523 - AO353_04575 0.16 +1.6 988,523 - AO353_04575 0.16 -2.9 988,523 - AO353_04575 0.16 -0.4 988,523 - AO353_04575 0.16 +2.7 988,784 + AO353_04575 0.44 +1.1 988,784 + AO353_04575 0.44 +0.1 988,784 + AO353_04575 0.44 +2.0 988,784 + AO353_04575 0.44 -1.5 988,785 - AO353_04575 0.44 +1.2 988,785 - AO353_04575 0.44 -1.5 988,785 - AO353_04575 0.44 -1.9 988,785 - AO353_04575 0.44 +3.6 989,117 + AO353_04575 0.80 -0.9 989,117 + AO353_04575 0.80 -0.9 989,117 + AO353_04575 0.80 -0.9 989,117 + AO353_04575 0.80 -0.2 989,117 + AO353_04575 0.80 -1.5 989,117 + AO353_04575 0.80 -2.3 989,117 + AO353_04575 0.80 -0.9 989,118 - AO353_04575 0.80 -1.5 989,118 - AO353_04575 0.80 +0.4 989,118 - AO353_04575 0.80 +0.1 989,118 - AO353_04575 0.80 -2.3 989,118 - AO353_04575 0.80 +0.7 989,325 + +0.9 989,325 + +0.1 989,325 + +2.3 989,325 + +0.1 989,325 + +2.4 989,325 + -2.3 989,325 + +1.1 989,325 + -0.4 989,325 + +0.7 989,325 + -1.5 989,325 + -0.4 989,325 + -1.1 989,325 + -0.9 989,340 + +0.1 989,363 + -0.9 989,386 + +0.1 989,386 + +1.0 989,386 + +2.4 989,386 + +1.3 989,386 + -1.5 989,386 + +2.4 989,386 + +0.7 989,386 + -0.9 989,386 + -3.4 989,387 - -0.4 989,387 - +1.1 989,387 - +2.1 989,387 - +0.1 989,387 - -0.9 989,387 - -0.9 989,402 - -0.9 989,491 - AO353_04580 0.31 -0.9 989,510 + AO353_04580 0.37 -1.9 989,510 + AO353_04580 0.37 -2.3 989,510 + AO353_04580 0.37 +0.1 989,510 + AO353_04580 0.37 -2.9 989,510 + AO353_04580 0.37 +1.3 989,511 - AO353_04580 0.37 +0.6 989,556 + AO353_04580 0.51 +2.1 989,609 + AO353_04580 0.68 -2.3 989,609 + AO353_04580 0.68 +1.1 989,610 - AO353_04580 0.68 -1.5 989,639 + AO353_04580 0.77 +0.3 989,639 + AO353_04580 0.77 -0.9 989,639 + AO353_04580 0.77 -1.9 989,730 + -1.5 989,731 - +0.1 989,750 + -1.7 989,751 - +0.5 989,975 + AO353_04585 0.47 +0.9 989,975 + AO353_04585 0.47 -3.3 989,975 + AO353_04585 0.47 +0.1 989,975 + AO353_04585 0.47 -3.3 989,975 + AO353_04585 0.47 +0.1 989,975 + AO353_04585 0.47 -1.9 989,975 + AO353_04585 0.47 -0.9 989,976 - AO353_04585 0.48 -2.3 989,976 - AO353_04585 0.48 +2.1 989,976 - AO353_04585 0.48 +0.9 989,976 - AO353_04585 0.48 -0.2 990,141 - AO353_04585 0.83 -2.0 990,185 + -1.4 990,185 + -1.5 990,185 + -0.5 990,185 + +0.1 990,185 + +2.1 990,185 + -1.5 990,185 + -0.9 990,186 - -1.2 990,186 - +2.5 990,186 - -0.9 990,186 - -1.5 990,273 + +3.6 990,274 - -0.9 990,297 - +1.8 990,297 - +3.8
Or see this region's nucleotide sequence