Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04280

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04275 and AO353_04280 are separated by 1 nucleotidesAO353_04280 and AO353_04285 overlap by 11 nucleotides AO353_04275: AO353_04275 - polyamine ABC transporter ATP-binding protein, at 920,211 to 921,248 _04275 AO353_04280: AO353_04280 - spermidine/putrescine ABC transporter permease, at 921,250 to 922,197 _04280 AO353_04285: AO353_04285 - spermidine/putrescine ABC transporter permease, at 922,187 to 923,029 _04285 Position (kb) 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 920.481 kb on - strand, within AO353_04275at 920.481 kb on - strand, within AO353_04275at 920.481 kb on - strand, within AO353_04275at 920.505 kb on + strand, within AO353_04275at 920.505 kb on + strand, within AO353_04275at 920.506 kb on - strand, within AO353_04275at 920.600 kb on + strand, within AO353_04275at 920.600 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 921.067 kb on - strand, within AO353_04275at 921.337 kb on + strandat 921.338 kb on - strandat 921.338 kb on - strandat 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.425 kb on - strand, within AO353_04280at 921.425 kb on - strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.598 kb on + strand, within AO353_04280at 921.599 kb on - strand, within AO353_04280at 921.599 kb on - strand, within AO353_04280at 921.628 kb on + strand, within AO353_04280at 921.629 kb on - strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.676 kb on + strand, within AO353_04280at 921.676 kb on + strand, within AO353_04280at 921.832 kb on + strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.917 kb on + strand, within AO353_04280at 921.917 kb on + strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 922.054 kb on + strand, within AO353_04280at 922.054 kb on + strand, within AO353_04280at 922.055 kb on - strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.076 kb on - strand, within AO353_04280at 922.139 kb on + strandat 922.139 kb on + strandat 922.139 kb on + strandat 922.139 kb on + strandat 922.140 kb on - strandat 922.153 kb on + strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.664 kb on + strand, within AO353_04285at 922.664 kb on + strand, within AO353_04285at 922.665 kb on - strand, within AO353_04285at 922.665 kb on - strand, within AO353_04285at 922.665 kb on - strand, within AO353_04285at 922.694 kb on - strand, within AO353_04285at 922.694 kb on - strand, within AO353_04285at 922.700 kb on + strand, within AO353_04285at 922.700 kb on + strand, within AO353_04285at 922.701 kb on - strand, within AO353_04285at 922.758 kb on - strand, within AO353_04285at 922.758 kb on - strand, within AO353_04285at 922.979 kb on + strandat 922.979 kb on + strandat 922.979 kb on + strandat 922.980 kb on - strandat 922.980 kb on - strandat 922.982 kb on + strandat 922.982 kb on + strandat 922.982 kb on + strandat 922.983 kb on - strandat 922.983 kb on - strandat 922.983 kb on - strandat 923.024 kb on - strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.041 kb on + strandat 923.041 kb on + strandat 923.042 kb on - strandat 923.122 kb on + strandat 923.122 kb on + strandat 923.122 kb on + strandat 923.123 kb on - strandat 923.123 kb on - strandat 923.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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920,481 - AO353_04275 0.26 +1.3
920,481 - AO353_04275 0.26 +1.8
920,481 - AO353_04275 0.26 +0.3
920,505 + AO353_04275 0.28 -0.2
920,505 + AO353_04275 0.28 +0.1
920,506 - AO353_04275 0.28 +1.4
920,600 + AO353_04275 0.37 +1.2
920,600 + AO353_04275 0.37 +0.1
920,877 + AO353_04275 0.64 +0.4
920,877 + AO353_04275 0.64 -2.7
920,877 + AO353_04275 0.64 +0.5
920,878 - AO353_04275 0.64 +1.4
920,878 - AO353_04275 0.64 +2.1
920,878 - AO353_04275 0.64 +2.1
920,878 - AO353_04275 0.64 +1.9
920,878 - AO353_04275 0.64 -2.2
920,878 - AO353_04275 0.64 +0.1
920,878 - AO353_04275 0.64 +1.7
921,067 - AO353_04275 0.82 -1.9
921,337 + -1.9
921,338 - +0.1
921,338 - +2.7
921,385 + AO353_04280 0.14 -0.9
921,385 + AO353_04280 0.14 -0.1
921,385 + AO353_04280 0.14 -0.5
921,385 + AO353_04280 0.14 -1.9
921,385 + AO353_04280 0.14 +0.1
921,386 - AO353_04280 0.14 +0.1
921,386 - AO353_04280 0.14 +1.7
921,386 - AO353_04280 0.14 +1.0
921,424 + AO353_04280 0.18 -0.5
921,424 + AO353_04280 0.18 +0.7
921,424 + AO353_04280 0.18 -1.5
921,424 + AO353_04280 0.18 -1.5
921,425 - AO353_04280 0.18 -0.9
921,425 - AO353_04280 0.18 +0.1
921,583 + AO353_04280 0.35 +4.2
921,583 + AO353_04280 0.35 +1.6
921,583 + AO353_04280 0.35 +0.2
921,583 + AO353_04280 0.35 +0.1
921,583 + AO353_04280 0.35 -0.5
921,583 + AO353_04280 0.35 +1.7
921,583 + AO353_04280 0.35 +0.1
921,583 + AO353_04280 0.35 -1.4
921,583 + AO353_04280 0.35 +2.5
921,584 - AO353_04280 0.35 -2.2
921,584 - AO353_04280 0.35 +2.9
921,584 - AO353_04280 0.35 +1.7
921,586 + AO353_04280 0.35 +1.5
921,586 + AO353_04280 0.35 -2.2
921,586 + AO353_04280 0.35 +1.0
921,586 + AO353_04280 0.35 -1.5
921,586 + AO353_04280 0.35 +0.6
921,586 + AO353_04280 0.35 +0.7
921,586 + AO353_04280 0.35 -0.5
921,586 + AO353_04280 0.35 -1.7
921,586 + AO353_04280 0.35 +0.4
921,587 - AO353_04280 0.36 +0.1
921,587 - AO353_04280 0.36 +2.9
921,587 - AO353_04280 0.36 +1.8
921,587 - AO353_04280 0.36 -0.9
921,587 - AO353_04280 0.36 +0.1
921,587 - AO353_04280 0.36 +0.1
921,587 - AO353_04280 0.36 -0.2
921,587 - AO353_04280 0.36 +3.9
921,587 - AO353_04280 0.36 +2.7
921,587 - AO353_04280 0.36 +0.1
921,598 + AO353_04280 0.37 -0.3
921,599 - AO353_04280 0.37 +1.1
921,599 - AO353_04280 0.37 -1.5
921,628 + AO353_04280 0.40 +0.1
921,629 - AO353_04280 0.40 -0.5
921,661 + AO353_04280 0.43 -0.9
921,661 + AO353_04280 0.43 -2.2
921,661 + AO353_04280 0.43 +0.1
921,661 + AO353_04280 0.43 +1.1
921,661 + AO353_04280 0.43 +1.9
921,661 + AO353_04280 0.43 -2.5
921,662 - AO353_04280 0.43 +3.1
921,662 - AO353_04280 0.43 +1.7
921,662 - AO353_04280 0.43 -0.9
921,662 - AO353_04280 0.43 +0.7
921,662 - AO353_04280 0.43 +0.1
921,662 - AO353_04280 0.43 -0.9
921,662 - AO353_04280 0.43 -0.9
921,676 + AO353_04280 0.45 +0.1
921,676 + AO353_04280 0.45 -1.5
921,832 + AO353_04280 0.61 -0.9
921,833 - AO353_04280 0.61 +0.1
921,833 - AO353_04280 0.61 -0.9
921,833 - AO353_04280 0.61 -0.9
921,833 - AO353_04280 0.61 -1.5
921,917 + AO353_04280 0.70 +0.1
921,917 + AO353_04280 0.70 +0.1
921,918 - AO353_04280 0.70 +2.5
921,918 - AO353_04280 0.70 +1.8
921,918 - AO353_04280 0.70 -2.2
921,918 - AO353_04280 0.70 -1.9
922,054 + AO353_04280 0.85 +3.3
922,054 + AO353_04280 0.85 -1.9
922,055 - AO353_04280 0.85 +1.4
922,075 + AO353_04280 0.87 -1.5
922,075 + AO353_04280 0.87 +0.5
922,075 + AO353_04280 0.87 -0.9
922,076 - AO353_04280 0.87 -0.1
922,139 + -1.9
922,139 + -1.9
922,139 + -1.5
922,139 + -1.5
922,140 - -0.9
922,153 + -1.5
922,154 - +2.4
922,154 - +1.5
922,154 - +0.1
922,154 - -2.5
922,154 - -0.9
922,664 + AO353_04285 0.57 +1.4
922,664 + AO353_04285 0.57 -2.2
922,665 - AO353_04285 0.57 +0.1
922,665 - AO353_04285 0.57 +0.1
922,665 - AO353_04285 0.57 +0.4
922,694 - AO353_04285 0.60 +1.3
922,694 - AO353_04285 0.60 -0.9
922,700 + AO353_04285 0.61 -0.5
922,700 + AO353_04285 0.61 +1.3
922,701 - AO353_04285 0.61 -0.9
922,758 - AO353_04285 0.68 -1.5
922,758 - AO353_04285 0.68 +1.6
922,979 + +0.9
922,979 + +1.3
922,979 + +0.9
922,980 - +0.1
922,980 - +1.3
922,982 + -0.9
922,982 + -0.7
922,982 + +2.5
922,983 - -0.9
922,983 - -0.4
922,983 - +0.2
923,024 - +0.1
923,027 + +3.0
923,027 + -1.5
923,027 + +1.1
923,027 + +1.1
923,027 + +1.9
923,028 - +0.4
923,028 - -0.9
923,028 - -1.5
923,028 - -0.9
923,028 - +0.1
923,041 + -1.5
923,041 + +2.1
923,042 - +1.8
923,122 + -1.5
923,122 + -0.9
923,122 + -3.2
923,123 - -1.0
923,123 - -2.5
923,123 - -0.9

Or see this region's nucleotide sequence