Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03855 and AO353_03860 are separated by 216 nucleotides AO353_03860 and AO353_03865 overlap by 4 nucleotides
AO353_03855: AO353_03855 - spermidine/putrescine ABC transporter substrate-binding protein, at 823,362 to 824,465
_03855
AO353_03860: AO353_03860 - aldehyde dehydrogenase, at 824,682 to 826,130
_03860
AO353_03865: AO353_03865 - hypothetical protein, at 826,127 to 827,764
_03865
Position (kb) 824
825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 823.690 kb on + strand, within AO353_03855 at 823.690 kb on + strand, within AO353_03855 at 823.690 kb on + strand, within AO353_03855 at 823.690 kb on + strand, within AO353_03855 at 823.691 kb on - strand, within AO353_03855 at 823.691 kb on - strand, within AO353_03855 at 823.691 kb on - strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.732 kb on + strand, within AO353_03855 at 823.733 kb on - strand, within AO353_03855 at 823.733 kb on - strand, within AO353_03855 at 823.733 kb on - strand, within AO353_03855 at 823.733 kb on - strand, within AO353_03855 at 823.733 kb on - strand, within AO353_03855 at 823.969 kb on + strand, within AO353_03855 at 823.969 kb on + strand, within AO353_03855 at 823.969 kb on + strand, within AO353_03855 at 823.970 kb on - strand, within AO353_03855 at 823.970 kb on - strand, within AO353_03855 at 823.970 kb on - strand, within AO353_03855 at 823.970 kb on - strand, within AO353_03855 at 823.970 kb on - strand, within AO353_03855 at 823.970 kb on - strand, within AO353_03855 at 824.005 kb on + strand, within AO353_03855 at 824.006 kb on - strand, within AO353_03855 at 824.033 kb on - strand, within AO353_03855 at 824.066 kb on - strand, within AO353_03855 at 824.176 kb on + strand, within AO353_03855 at 824.176 kb on + strand, within AO353_03855 at 824.177 kb on - strand, within AO353_03855 at 824.177 kb on - strand, within AO353_03855 at 824.225 kb on + strand, within AO353_03855 at 824.226 kb on - strand, within AO353_03855 at 824.226 kb on - strand, within AO353_03855 at 824.226 kb on - strand, within AO353_03855 at 824.226 kb on - strand, within AO353_03855 at 824.226 kb on - strand, within AO353_03855 at 824.421 kb on + strand at 824.422 kb on - strand at 824.479 kb on + strand at 824.479 kb on + strand at 824.479 kb on + strand at 824.479 kb on + strand at 824.480 kb on - strand at 824.480 kb on - strand at 824.480 kb on - strand at 824.480 kb on - strand at 824.480 kb on - strand at 824.480 kb on - strand at 824.480 kb on - strand at 824.487 kb on + strand at 824.487 kb on + strand at 824.487 kb on + strand at 824.487 kb on + strand at 824.487 kb on + strand at 824.488 kb on - strand at 824.488 kb on - strand at 824.488 kb on - strand at 824.488 kb on - strand at 824.488 kb on - strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.491 kb on + strand at 824.492 kb on - strand at 824.492 kb on - strand at 824.492 kb on - strand at 824.492 kb on - strand at 824.492 kb on - strand at 824.498 kb on + strand at 824.499 kb on - strand at 824.548 kb on + strand at 824.549 kb on - strand at 824.549 kb on - strand at 824.549 kb on - strand at 824.549 kb on - strand at 824.706 kb on + strand at 824.706 kb on + strand at 824.706 kb on + strand at 824.706 kb on + strand at 824.707 kb on - strand at 824.707 kb on - strand at 824.707 kb on - strand at 824.707 kb on - strand at 824.707 kb on - strand at 824.767 kb on + strand at 825.034 kb on + strand, within AO353_03860 at 825.034 kb on + strand, within AO353_03860 at 825.034 kb on + strand, within AO353_03860 at 825.128 kb on - strand, within AO353_03860 at 825.790 kb on + strand, within AO353_03860 at 825.791 kb on - strand, within AO353_03860 at 825.791 kb on - strand, within AO353_03860 at 825.791 kb on - strand, within AO353_03860 at 825.793 kb on + strand, within AO353_03860 at 825.793 kb on + strand, within AO353_03860 at 825.794 kb on - strand, within AO353_03860 at 825.794 kb on - strand, within AO353_03860 at 825.794 kb on - strand, within AO353_03860 at 825.871 kb on + strand, within AO353_03860 at 825.871 kb on + strand, within AO353_03860 at 825.871 kb on + strand, within AO353_03860 at 825.871 kb on + strand, within AO353_03860 at 825.871 kb on + strand, within AO353_03860 at 825.871 kb on + strand, within AO353_03860 at 825.871 kb on + strand, within AO353_03860 at 826.097 kb on + strand at 826.099 kb on + strand at 826.099 kb on + strand at 826.099 kb on + strand at 826.099 kb on + strand at 826.099 kb on + strand at 826.099 kb on + strand at 826.099 kb on + strand at 826.099 kb on + strand at 826.100 kb on - strand at 826.100 kb on - strand at 826.100 kb on - strand at 826.100 kb on - strand at 826.290 kb on + strand at 826.290 kb on + strand at 826.290 kb on + strand at 826.290 kb on + strand at 826.290 kb on + strand at 826.290 kb on + strand at 826.290 kb on + strand at 826.290 kb on + strand at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.291 kb on - strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.332 kb on + strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.333 kb on - strand, within AO353_03865 at 826.361 kb on - strand, within AO353_03865 at 826.524 kb on + strand, within AO353_03865 at 826.602 kb on + strand, within AO353_03865 at 826.602 kb on + strand, within AO353_03865 at 826.602 kb on + strand, within AO353_03865 at 826.603 kb on - strand, within AO353_03865 at 826.603 kb on - strand, within AO353_03865 at 826.603 kb on - strand, within AO353_03865 at 826.603 kb on - strand, within AO353_03865 at 826.846 kb on - strand, within AO353_03865 at 826.929 kb on + strand, within AO353_03865 at 826.930 kb on - strand, within AO353_03865 at 827.091 kb on - strand, within AO353_03865 at 827.091 kb on - strand, within AO353_03865
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 823,690 + AO353_03855 0.30 -3.0 823,690 + AO353_03855 0.30 -0.0 823,690 + AO353_03855 0.30 +1.0 823,690 + AO353_03855 0.30 +0.7 823,691 - AO353_03855 0.30 +0.6 823,691 - AO353_03855 0.30 -0.0 823,691 - AO353_03855 0.30 -2.3 823,732 + AO353_03855 0.34 +0.8 823,732 + AO353_03855 0.34 -0.4 823,732 + AO353_03855 0.34 +0.5 823,732 + AO353_03855 0.34 +0.7 823,732 + AO353_03855 0.34 +1.0 823,732 + AO353_03855 0.34 -0.0 823,732 + AO353_03855 0.34 -1.0 823,732 + AO353_03855 0.34 +0.6 823,733 - AO353_03855 0.34 -0.2 823,733 - AO353_03855 0.34 +1.1 823,733 - AO353_03855 0.34 -2.0 823,733 - AO353_03855 0.34 -2.0 823,733 - AO353_03855 0.34 -1.4 823,969 + AO353_03855 0.55 -0.0 823,969 + AO353_03855 0.55 -0.0 823,969 + AO353_03855 0.55 -2.3 823,970 - AO353_03855 0.55 +1.5 823,970 - AO353_03855 0.55 -1.6 823,970 - AO353_03855 0.55 +0.3 823,970 - AO353_03855 0.55 -2.0 823,970 - AO353_03855 0.55 -2.0 823,970 - AO353_03855 0.55 -1.8 824,005 + AO353_03855 0.58 +1.6 824,006 - AO353_03855 0.58 -0.0 824,033 - AO353_03855 0.61 -2.6 824,066 - AO353_03855 0.64 +3.9 824,176 + AO353_03855 0.74 -0.0 824,176 + AO353_03855 0.74 -2.8 824,177 - AO353_03855 0.74 +2.0 824,177 - AO353_03855 0.74 -2.0 824,225 + AO353_03855 0.78 +0.5 824,226 - AO353_03855 0.78 -0.0 824,226 - AO353_03855 0.78 +0.4 824,226 - AO353_03855 0.78 -2.0 824,226 - AO353_03855 0.78 -2.8 824,226 - AO353_03855 0.78 +0.4 824,421 + -2.8 824,422 - -0.4 824,479 + +1.0 824,479 + -1.6 824,479 + -1.0 824,479 + -0.0 824,480 - +2.2 824,480 - -0.0 824,480 - -3.3 824,480 - +0.5 824,480 - +1.6 824,480 - +0.5 824,480 - -1.0 824,487 + -0.5 824,487 + +0.7 824,487 + -0.4 824,487 + +2.6 824,487 + -0.2 824,488 - +0.4 824,488 - -0.0 824,488 - +2.7 824,488 - +0.7 824,488 - -2.3 824,491 + +0.2 824,491 + -2.0 824,491 + -2.0 824,491 + -2.0 824,491 + -0.0 824,491 + -2.0 824,491 + -0.3 824,491 + -2.3 824,491 + -1.6 824,491 + -0.3 824,491 + +0.7 824,492 - -1.6 824,492 - +0.5 824,492 - -3.3 824,492 - -0.8 824,492 - -2.8 824,498 + -1.0 824,499 - -0.0 824,548 + -1.0 824,549 - -0.3 824,549 - -2.0 824,549 - -2.0 824,549 - -1.6 824,706 + -1.0 824,706 + -2.0 824,706 + -2.3 824,706 + -0.2 824,707 - +1.1 824,707 - +1.2 824,707 - -0.0 824,707 - +0.4 824,707 - +1.4 824,767 + +0.6 825,034 + AO353_03860 0.24 +2.6 825,034 + AO353_03860 0.24 -1.0 825,034 + AO353_03860 0.24 +0.7 825,128 - AO353_03860 0.31 -1.0 825,790 + AO353_03860 0.76 +0.9 825,791 - AO353_03860 0.77 -1.0 825,791 - AO353_03860 0.77 -1.0 825,791 - AO353_03860 0.77 -1.6 825,793 + AO353_03860 0.77 -2.0 825,793 + AO353_03860 0.77 +1.1 825,794 - AO353_03860 0.77 -1.0 825,794 - AO353_03860 0.77 -0.0 825,794 - AO353_03860 0.77 +1.3 825,871 + AO353_03860 0.82 +1.3 825,871 + AO353_03860 0.82 +1.4 825,871 + AO353_03860 0.82 -2.8 825,871 + AO353_03860 0.82 +1.3 825,871 + AO353_03860 0.82 +0.5 825,871 + AO353_03860 0.82 +1.5 825,871 + AO353_03860 0.82 +0.6 826,097 + +0.4 826,099 + -0.0 826,099 + -2.8 826,099 + +1.1 826,099 + +1.3 826,099 + +0.9 826,099 + -0.0 826,099 + +0.8 826,099 + +1.3 826,100 - +1.0 826,100 - -0.0 826,100 - -0.0 826,100 - -0.6 826,290 + +1.8 826,290 + +2.1 826,290 + -1.6 826,290 + +1.1 826,290 + -0.0 826,290 + -1.6 826,290 + +1.2 826,290 + -0.4 826,291 - AO353_03865 0.10 -1.0 826,291 - AO353_03865 0.10 +2.0 826,291 - AO353_03865 0.10 -0.0 826,291 - AO353_03865 0.10 -3.3 826,291 - -1.0 826,291 - AO353_03865 0.10 -0.0 826,291 - AO353_03865 0.10 -0.0 826,291 - AO353_03865 0.10 -2.0 826,291 - AO353_03865 0.10 -1.6 826,291 - AO353_03865 0.10 +1.7 826,291 - AO353_03865 0.10 +2.1 826,291 - AO353_03865 0.10 +0.3 826,291 - AO353_03865 0.10 -3.0 826,291 - AO353_03865 0.10 -2.0 826,332 + AO353_03865 0.13 -0.6 826,332 + AO353_03865 0.13 +1.2 826,332 + AO353_03865 0.13 +2.0 826,332 + AO353_03865 0.13 -0.0 826,332 + AO353_03865 0.13 +2.2 826,332 + AO353_03865 0.13 -3.2 826,332 + AO353_03865 0.13 +0.8 826,332 + AO353_03865 0.13 -0.0 826,332 + AO353_03865 0.13 -1.9 826,333 - AO353_03865 0.13 -1.0 826,333 - AO353_03865 0.13 +0.8 826,333 - AO353_03865 0.13 +0.7 826,333 - AO353_03865 0.13 -0.0 826,333 - AO353_03865 0.13 -1.0 826,333 - AO353_03865 0.13 +0.6 826,333 - AO353_03865 0.13 +1.0 826,333 - AO353_03865 0.13 -2.0 826,333 - AO353_03865 0.13 -0.0 826,361 - AO353_03865 0.14 -1.6 826,524 + AO353_03865 0.24 -2.6 826,602 + AO353_03865 0.29 -0.0 826,602 + AO353_03865 0.29 -2.8 826,602 + AO353_03865 0.29 +1.5 826,603 - AO353_03865 0.29 -0.0 826,603 - AO353_03865 0.29 -2.6 826,603 - AO353_03865 0.29 -0.0 826,603 - AO353_03865 0.29 -1.6 826,846 - AO353_03865 0.44 -1.0 826,929 + AO353_03865 0.49 +3.1 826,930 - AO353_03865 0.49 -0.0 827,091 - AO353_03865 0.59 +4.0 827,091 - AO353_03865 0.59 -1.6
Or see this region's nucleotide sequence