Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03460 and AO353_03465 are separated by 496 nucleotides AO353_03465 and AO353_03470 are separated by 42 nucleotides
AO353_03460: AO353_03460 - 3-methyladenine DNA glycosylase 2, at 738,923 to 739,786
_03460
AO353_03465: AO353_03465 - arginine-ornithine antiporter, at 740,283 to 741,710
_03465
AO353_03470: AO353_03470 - arginine deiminase, at 741,753 to 743,009
_03470
Position (kb) 740
741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 739.345 kb on - strand, within AO353_03460 at 739.416 kb on - strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.604 kb on + strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.619 kb on - strand, within AO353_03460 at 739.633 kb on + strand, within AO353_03460 at 739.755 kb on + strand at 739.755 kb on + strand at 739.756 kb on - strand at 739.767 kb on + strand at 739.768 kb on - strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.878 kb on - strand at 739.878 kb on - strand at 739.896 kb on + strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.900 kb on + strand at 739.900 kb on + strand at 739.901 kb on - strand at 739.912 kb on + strand at 739.921 kb on - strand at 739.921 kb on - strand at 739.923 kb on + strand at 739.924 kb on - strand at 739.967 kb on + strand at 739.967 kb on + strand at 739.967 kb on + strand at 739.968 kb on - strand at 740.010 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.015 kb on - strand at 740.068 kb on + strand at 740.068 kb on + strand at 740.069 kb on - strand at 740.069 kb on - strand at 740.069 kb on - strand at 740.112 kb on + strand at 740.113 kb on - strand at 740.167 kb on + strand at 740.168 kb on - strand at 740.168 kb on - strand at 740.244 kb on + strand at 740.306 kb on - strand at 740.306 kb on - strand at 740.306 kb on - strand at 740.321 kb on - strand at 740.332 kb on + strand at 740.332 kb on + strand at 740.333 kb on - strand at 740.333 kb on - strand at 740.333 kb on - strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.505 kb on + strand, within AO353_03465 at 740.505 kb on + strand, within AO353_03465 at 740.505 kb on + strand, within AO353_03465 at 740.506 kb on - strand, within AO353_03465 at 740.506 kb on - strand, within AO353_03465 at 740.512 kb on - strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.595 kb on + strand, within AO353_03465 at 740.596 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.625 kb on + strand, within AO353_03465 at 740.625 kb on + strand, within AO353_03465 at 740.655 kb on - strand, within AO353_03465 at 740.655 kb on - strand, within AO353_03465 at 740.869 kb on + strand, within AO353_03465 at 740.869 kb on + strand, within AO353_03465 at 740.869 kb on + strand, within AO353_03465 at 740.870 kb on - strand, within AO353_03465 at 740.870 kb on - strand, within AO353_03465 at 741.098 kb on - strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.361 kb on - strand, within AO353_03465 at 741.390 kb on + strand, within AO353_03465 at 741.390 kb on + strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.408 kb on + strand, within AO353_03465 at 741.409 kb on - strand, within AO353_03465 at 741.442 kb on - strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.520 kb on - strand, within AO353_03465 at 741.520 kb on - strand, within AO353_03465 at 741.537 kb on + strand, within AO353_03465 at 741.538 kb on - strand, within AO353_03465 at 741.561 kb on + strand, within AO353_03465 at 741.561 kb on + strand, within AO353_03465 at 741.687 kb on + strand at 741.687 kb on + strand at 741.688 kb on - strand at 741.688 kb on - strand at 741.688 kb on - strand at 741.688 kb on - strand at 741.708 kb on + strand at 741.708 kb on + strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.737 kb on - strand at 741.737 kb on - strand at 741.737 kb on - strand at 741.774 kb on + strand at 741.774 kb on + strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.782 kb on - strand at 741.782 kb on - strand at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.339 kb on - strand, within AO353_03470 at 742.339 kb on - strand, within AO353_03470
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 739,345 - AO353_03460 0.49 -1.0 739,416 - AO353_03460 0.57 -1.0 739,454 + AO353_03460 0.61 -0.4 739,454 + AO353_03460 0.61 +1.1 739,454 + AO353_03460 0.61 -0.0 739,454 + AO353_03460 0.61 -1.3 739,454 + AO353_03460 0.61 +2.0 739,454 + AO353_03460 0.61 -0.4 739,454 + AO353_03460 0.61 -1.0 739,604 + AO353_03460 0.79 +1.4 739,605 - AO353_03460 0.79 +1.7 739,605 - AO353_03460 0.79 +0.3 739,605 - AO353_03460 0.79 -1.0 739,605 - AO353_03460 0.79 +1.5 739,605 - AO353_03460 0.79 -1.0 739,618 + AO353_03460 0.80 +4.4 739,618 + AO353_03460 0.80 -0.6 739,619 - AO353_03460 0.81 +2.0 739,633 + AO353_03460 0.82 +2.2 739,755 + -2.4 739,755 + +2.1 739,756 - +0.4 739,767 + +2.0 739,768 - -1.0 739,834 + -1.0 739,834 + +1.3 739,834 + -4.1 739,834 + -3.0 739,834 + +1.0 739,834 + +1.0 739,835 - -2.4 739,835 - +0.7 739,835 - +1.5 739,835 - -1.0 739,835 - -1.6 739,835 - -1.0 739,878 - +3.7 739,878 - -2.0 739,896 + -0.0 739,897 - -1.6 739,897 - +1.0 739,897 - +1.0 739,897 - -0.0 739,900 + -2.0 739,900 + -0.0 739,901 - +1.7 739,912 + +0.5 739,921 - -1.6 739,921 - -1.0 739,923 + -0.0 739,924 - -2.0 739,967 + -2.6 739,967 + -2.4 739,967 + -1.0 739,968 - -1.0 740,010 + +0.5 740,014 + +2.0 740,014 + -0.0 740,014 + -1.6 740,014 + +2.4 740,014 + -0.0 740,015 - -0.0 740,068 + -0.0 740,068 + -0.5 740,069 - +1.5 740,069 - +2.5 740,069 - +2.9 740,112 + -1.0 740,113 - -0.0 740,167 + -0.0 740,168 - -0.0 740,168 - -0.0 740,244 + -0.0 740,306 - -1.6 740,306 - -1.0 740,306 - -2.9 740,321 - -1.0 740,332 + -0.0 740,332 + +0.5 740,333 - -3.6 740,333 - -1.0 740,333 - -3.4 740,335 + -1.6 740,335 + -0.0 740,335 + +1.7 740,335 + -2.0 740,335 + -3.0 740,335 + +0.4 740,335 + -2.2 740,335 + -1.6 740,335 + +1.4 740,335 + +2.3 740,335 + +0.7 740,335 + -0.0 740,335 + +2.1 740,335 + -0.5 740,336 - -1.0 740,336 - -1.6 740,336 - +1.2 740,336 - -0.4 740,336 - -1.0 740,336 - +2.3 740,336 - -2.0 740,336 - +3.0 740,336 - -0.0 740,336 - -2.0 740,505 + AO353_03465 0.16 +2.9 740,505 + AO353_03465 0.16 +3.5 740,505 + AO353_03465 0.16 +0.5 740,506 - AO353_03465 0.16 -1.0 740,506 - AO353_03465 0.16 +3.4 740,512 - AO353_03465 0.16 +2.4 740,535 + AO353_03465 0.18 -1.0 740,535 + AO353_03465 0.18 -0.3 740,535 + AO353_03465 0.18 -0.0 740,535 + AO353_03465 0.18 -1.0 740,535 + AO353_03465 0.18 -0.0 740,535 + AO353_03465 0.18 -1.4 740,535 + AO353_03465 0.18 -2.0 740,535 + AO353_03465 0.18 -0.9 740,535 + AO353_03465 0.18 -3.4 740,535 + AO353_03465 0.18 -0.0 740,536 - AO353_03465 0.18 -0.0 740,536 - AO353_03465 0.18 +1.0 740,536 - AO353_03465 0.18 -0.0 740,536 - AO353_03465 0.18 +1.0 740,536 - AO353_03465 0.18 -1.0 740,595 + AO353_03465 0.22 -2.4 740,596 - AO353_03465 0.22 +3.0 740,603 - AO353_03465 0.22 -0.0 740,603 - AO353_03465 0.22 -0.0 740,603 - AO353_03465 0.22 -1.0 740,625 + AO353_03465 0.24 +0.1 740,625 + AO353_03465 0.24 -1.6 740,655 - AO353_03465 0.26 -2.4 740,655 - AO353_03465 0.26 +0.2 740,869 + AO353_03465 0.41 -1.0 740,869 + AO353_03465 0.41 -1.6 740,869 + AO353_03465 0.41 -1.6 740,870 - AO353_03465 0.41 -1.6 740,870 - AO353_03465 0.41 -1.0 741,098 - AO353_03465 0.57 -0.0 741,341 + AO353_03465 0.74 +1.1 741,341 + AO353_03465 0.74 -0.0 741,341 + AO353_03465 0.74 +0.2 741,341 + AO353_03465 0.74 -3.2 741,341 + AO353_03465 0.74 +0.7 741,341 + AO353_03465 0.74 -1.0 741,341 + AO353_03465 0.74 -1.0 741,342 - AO353_03465 0.74 +0.5 741,342 - AO353_03465 0.74 -0.0 741,342 - AO353_03465 0.74 -1.5 741,342 - AO353_03465 0.74 -0.0 741,345 + AO353_03465 0.74 -2.0 741,345 + AO353_03465 0.74 +0.6 741,345 + AO353_03465 0.74 +0.7 741,345 + AO353_03465 0.74 +1.5 741,345 + AO353_03465 0.74 -1.0 741,345 + AO353_03465 0.74 +1.3 741,345 + AO353_03465 0.74 -0.2 741,345 + AO353_03465 0.74 -1.0 741,345 + AO353_03465 0.74 -2.9 741,345 + AO353_03465 0.74 +1.1 741,345 + AO353_03465 0.74 +1.4 741,345 + AO353_03465 0.74 +2.8 741,346 - AO353_03465 0.74 -0.0 741,346 - AO353_03465 0.74 -2.0 741,346 - AO353_03465 0.74 +1.1 741,346 - AO353_03465 0.74 -1.9 741,346 - AO353_03465 0.74 +1.1 741,346 - AO353_03465 0.74 -2.4 741,346 - AO353_03465 0.74 -2.4 741,346 - AO353_03465 0.74 -0.5 741,346 - AO353_03465 0.74 -2.0 741,346 - AO353_03465 0.74 -1.6 741,346 - AO353_03465 0.74 +1.1 741,346 - AO353_03465 0.74 -2.6 741,346 - AO353_03465 0.74 +2.3 741,346 - AO353_03465 0.74 -1.0 741,360 + AO353_03465 0.75 -0.0 741,360 + AO353_03465 0.75 +3.1 741,360 + AO353_03465 0.75 -0.3 741,360 + AO353_03465 0.75 -2.9 741,360 + AO353_03465 0.75 -1.6 741,361 - AO353_03465 0.75 -0.0 741,390 + AO353_03465 0.78 -1.6 741,390 + AO353_03465 0.78 +2.0 741,391 - AO353_03465 0.78 -0.7 741,391 - AO353_03465 0.78 +0.3 741,391 - AO353_03465 0.78 -1.9 741,391 - AO353_03465 0.78 -0.0 741,391 - AO353_03465 0.78 +1.3 741,408 + AO353_03465 0.79 -2.4 741,409 - AO353_03465 0.79 -1.4 741,442 - AO353_03465 0.81 -1.6 741,501 + AO353_03465 0.85 -1.6 741,501 + AO353_03465 0.85 -2.0 741,501 + AO353_03465 0.85 +0.3 741,501 + AO353_03465 0.85 +0.5 741,501 + AO353_03465 0.85 +0.7 741,501 + AO353_03465 0.85 +1.1 741,501 + AO353_03465 0.85 -0.0 741,502 - AO353_03465 0.85 -1.0 741,502 - AO353_03465 0.85 +2.1 741,502 - AO353_03465 0.85 +0.2 741,502 - AO353_03465 0.85 +0.4 741,502 - AO353_03465 0.85 -1.0 741,502 - AO353_03465 0.85 -1.0 741,519 + AO353_03465 0.87 +1.5 741,519 + AO353_03465 0.87 -0.0 741,519 + AO353_03465 0.87 -1.6 741,519 + AO353_03465 0.87 -1.6 741,520 - AO353_03465 0.87 -0.0 741,520 - AO353_03465 0.87 -0.0 741,537 + AO353_03465 0.88 -0.0 741,538 - AO353_03465 0.88 -0.0 741,561 + AO353_03465 0.89 -0.0 741,561 + AO353_03465 0.89 -2.6 741,687 + -0.0 741,687 + -1.3 741,688 - +0.7 741,688 - +3.8 741,688 - +1.0 741,688 - +2.8 741,708 + +0.1 741,708 + -1.6 741,709 - +0.3 741,709 - -2.9 741,709 - +2.0 741,709 - +1.8 741,709 - -1.0 741,737 - +1.5 741,737 - -1.0 741,737 - +3.1 741,774 + -2.9 741,774 + -2.4 741,775 - -0.0 741,775 - -1.0 741,775 - -1.0 741,775 - -1.0 741,775 - -2.0 741,782 - -2.9 741,782 - -0.0 742,266 + AO353_03470 0.41 +1.5 742,266 + AO353_03470 0.41 -0.8 742,266 + AO353_03470 0.41 -0.4 742,266 + AO353_03470 0.41 +2.1 742,266 + AO353_03470 0.41 +0.1 742,266 + AO353_03470 0.41 +1.0 742,266 + AO353_03470 0.41 +3.9 742,339 - AO353_03470 0.47 -0.0 742,339 - AO353_03470 0.47 +0.2
Or see this region's nucleotide sequence