Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03425

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03420 and AO353_03425 are separated by 224 nucleotidesAO353_03425 and AO353_03430 are separated by 24 nucleotidesAO353_03430 and AO353_03435 are separated by 75 nucleotides AO353_03420: AO353_03420 - phosphogluconate dehydratase, at 728,801 to 730,627 _03420 AO353_03425: AO353_03425 - glyceraldehyde-3-phosphate dehydrogenase, at 730,852 to 731,853 _03425 AO353_03430: AO353_03430 - methylglyoxal synthase, at 731,878 to 732,342 _03430 AO353_03435: AO353_03435 - RNA polymerase subunit sigma-24, at 732,418 to 732,936 _03435 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1 2 3at 729.957 kb on + strand, within AO353_03420at 729.958 kb on - strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.965 kb on - strand, within AO353_03420at 729.985 kb on - strand, within AO353_03420at 730.039 kb on - strand, within AO353_03420at 730.405 kb on + strand, within AO353_03420at 730.405 kb on + strand, within AO353_03420at 730.405 kb on + strand, within AO353_03420at 730.406 kb on - strand, within AO353_03420at 730.406 kb on - strand, within AO353_03420at 730.406 kb on - strand, within AO353_03420at 730.408 kb on - strand, within AO353_03420at 730.408 kb on - strand, within AO353_03420at 730.561 kb on - strandat 730.631 kb on + strandat 730.631 kb on + strandat 730.631 kb on + strandat 730.631 kb on + strandat 730.632 kb on - strandat 730.632 kb on - strandat 730.632 kb on - strandat 730.632 kb on - strandat 730.671 kb on + strandat 730.672 kb on - strandat 730.672 kb on - strandat 730.758 kb on - strandat 730.851 kb on + strandat 730.851 kb on + strandat 730.852 kb on - strandat 730.852 kb on - strandat 730.860 kb on - strandat 730.860 kb on - strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.918 kb on - strandat 730.941 kb on - strandat 730.941 kb on - strandat 730.971 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 731.000 kb on - strand, within AO353_03425at 731.000 kb on - strand, within AO353_03425at 731.000 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.190 kb on + strand, within AO353_03425at 731.214 kb on + strand, within AO353_03425at 731.214 kb on + strand, within AO353_03425at 731.215 kb on - strand, within AO353_03425at 731.215 kb on - strandat 731.254 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.399 kb on - strand, within AO353_03425at 731.399 kb on - strand, within AO353_03425at 731.399 kb on - strand, within AO353_03425at 731.418 kb on + strand, within AO353_03425at 731.419 kb on - strand, within AO353_03425at 731.419 kb on - strand, within AO353_03425at 731.428 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.675 kb on - strand, within AO353_03425at 731.675 kb on - strand, within AO353_03425at 731.675 kb on - strand, within AO353_03425at 731.712 kb on + strand, within AO353_03425at 731.712 kb on + strand, within AO353_03425at 731.713 kb on - strand, within AO353_03425at 731.713 kb on - strand, within AO353_03425at 731.713 kb on - strand, within AO353_03425at 731.851 kb on + strandat 731.852 kb on - strandat 732.259 kb on + strand, within AO353_03430at 732.259 kb on + strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.322 kb on + strandat 732.323 kb on - strandat 732.340 kb on + strandat 732.340 kb on + strandat 732.341 kb on - strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.415 kb on - strandat 732.415 kb on - strandat 732.415 kb on - strandat 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strandat 732.532 kb on + strand, within AO353_03435at 732.554 kb on + strand, within AO353_03435at 732.555 kb on - strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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729,957 + AO353_03420 0.63 -1.1
729,958 - AO353_03420 0.63 -0.1
729,964 + AO353_03420 0.64 -1.6
729,964 + AO353_03420 0.64 -1.1
729,964 + AO353_03420 0.64 +0.2
729,964 + AO353_03420 0.64 -1.6
729,965 - AO353_03420 0.64 -0.1
729,985 - AO353_03420 0.65 -1.1
730,039 - AO353_03420 0.68 +0.9
730,405 + AO353_03420 0.88 +0.9
730,405 + AO353_03420 0.88 +0.8
730,405 + AO353_03420 0.88 -0.1
730,406 - AO353_03420 0.88 -1.1
730,406 - AO353_03420 0.88 +0.7
730,406 - AO353_03420 0.88 +2.3
730,408 - AO353_03420 0.88 +2.3
730,408 - AO353_03420 0.88 -0.1
730,561 - -0.1
730,631 + -1.6
730,631 + -0.1
730,631 + +0.8
730,631 + -1.1
730,632 - -0.1
730,632 - -1.1
730,632 - -2.1
730,632 - -2.4
730,671 + -2.1
730,672 - -2.6
730,672 - +0.2
730,758 - -1.1
730,851 + +0.7
730,851 + -1.6
730,852 - -2.1
730,852 - -2.1
730,860 - -1.1
730,860 - -0.6
730,915 + -1.6
730,915 + -1.1
730,915 + +3.4
730,915 + -1.6
730,915 + +0.5
730,915 + +1.2
730,916 - -2.1
730,916 - -1.6
730,916 - -0.1
730,916 - +0.8
730,916 - -1.6
730,916 - +1.8
730,916 - -1.6
730,916 - +1.2
730,916 - +1.4
730,916 - +2.5
730,918 - +1.1
730,941 - +1.2
730,941 - +3.4
730,971 + AO353_03425 0.12 +1.6
730,999 + AO353_03425 0.15 +3.5
730,999 + AO353_03425 0.15 -2.6
730,999 + AO353_03425 0.15 -2.4
730,999 + AO353_03425 0.15 -2.6
730,999 + AO353_03425 0.15 -0.3
730,999 + AO353_03425 0.15 +0.5
731,000 - AO353_03425 0.15 -2.1
731,000 - AO353_03425 0.15 +0.3
731,000 - AO353_03425 0.15 +2.2
731,188 - AO353_03425 0.34 +1.6
731,188 - AO353_03425 0.34 -2.1
731,188 - AO353_03425 0.34 -0.6
731,188 - AO353_03425 0.34 +0.6
731,188 - AO353_03425 0.34 +0.5
731,188 - AO353_03425 0.34 -0.9
731,188 - AO353_03425 0.34 -0.1
731,190 + AO353_03425 0.34 -0.5
731,214 + AO353_03425 0.36 -1.4
731,214 + AO353_03425 0.36 +1.5
731,215 - AO353_03425 0.36 +2.9
731,215 - -1.1
731,254 + AO353_03425 0.40 -2.4
731,398 + AO353_03425 0.54 -0.1
731,398 + AO353_03425 0.54 +1.5
731,398 + AO353_03425 0.54 +0.5
731,398 + AO353_03425 0.54 -1.6
731,398 + AO353_03425 0.54 +1.8
731,398 + AO353_03425 0.54 +2.4
731,399 - AO353_03425 0.55 -1.8
731,399 - AO353_03425 0.55 -1.6
731,399 - AO353_03425 0.55 +0.8
731,418 + AO353_03425 0.56 -2.4
731,419 - AO353_03425 0.57 +1.6
731,419 - AO353_03425 0.57 +2.9
731,428 + AO353_03425 0.57 -0.1
731,674 + AO353_03425 0.82 +0.9
731,674 + AO353_03425 0.82 +1.5
731,674 + AO353_03425 0.82 -0.3
731,674 + AO353_03425 0.82 -2.4
731,674 + AO353_03425 0.82 -1.1
731,674 + AO353_03425 0.82 -0.5
731,674 + AO353_03425 0.82 -1.6
731,674 + AO353_03425 0.82 +1.9
731,674 + AO353_03425 0.82 -2.4
731,674 + AO353_03425 0.82 +0.9
731,674 + AO353_03425 0.82 +2.3
731,675 - AO353_03425 0.82 -1.6
731,675 - AO353_03425 0.82 -1.6
731,675 - AO353_03425 0.82 -1.1
731,712 + AO353_03425 0.86 -0.1
731,712 + AO353_03425 0.86 +1.3
731,713 - AO353_03425 0.86 +3.4
731,713 - AO353_03425 0.86 +1.5
731,713 - AO353_03425 0.86 +0.7
731,851 + +1.1
731,852 - -0.0
732,259 + AO353_03430 0.82 +0.8
732,259 + AO353_03430 0.82 -1.0
732,260 - AO353_03430 0.82 +1.5
732,260 - AO353_03430 0.82 +3.5
732,260 - AO353_03430 0.82 +0.8
732,322 + -0.2
732,323 - -2.4
732,340 + +0.6
732,340 + +0.8
732,341 - -1.0
732,414 + -2.6
732,414 + +1.3
732,414 + -0.6
732,414 + -0.3
732,415 - -0.0
732,415 - -1.4
732,415 - +0.3
732,532 + AO353_03435 0.22 -2.0
732,532 + AO353_03435 0.22 -1.0
732,532 + AO353_03435 0.22 -1.6
732,532 + AO353_03435 0.22 +0.3
732,532 + -0.0
732,532 + AO353_03435 0.22 +2.3
732,554 + AO353_03435 0.26 -1.6
732,555 - AO353_03435 0.26 -1.0
732,826 + AO353_03435 0.79 -1.0
732,826 + AO353_03435 0.79 -1.6
732,826 + AO353_03435 0.79 -1.3
732,826 + AO353_03435 0.79 +1.0
732,826 + AO353_03435 0.79 +2.1
732,826 + AO353_03435 0.79 -2.0
732,826 + AO353_03435 0.79 +1.3
732,826 + AO353_03435 0.79 -1.6
732,827 - AO353_03435 0.79 +2.5
732,827 - AO353_03435 0.79 +2.1
732,827 - AO353_03435 0.79 +1.0
732,827 - AO353_03435 0.79 +0.5
732,827 - AO353_03435 0.79 -1.0

Or see this region's nucleotide sequence