Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03345

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03340 and AO353_03345 are separated by 24 nucleotidesAO353_03345 and AO353_03350 are separated by 365 nucleotides AO353_03340: AO353_03340 - class V aminotransferase, at 710,723 to 711,904 _03340 AO353_03345: AO353_03345 - intradiol ring-cleavage dioxygenase, at 711,929 to 712,654 _03345 AO353_03350: AO353_03350 - keto-deoxy-phosphogluconate aldolase, at 713,020 to 713,685 _03350 Position (kb) 711 712 713Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 710.940 kb on + strand, within AO353_03340at 710.940 kb on + strand, within AO353_03340at 710.940 kb on + strand, within AO353_03340at 710.941 kb on - strand, within AO353_03340at 711.035 kb on + strand, within AO353_03340at 711.035 kb on + strand, within AO353_03340at 711.035 kb on + strand, within AO353_03340at 711.035 kb on + strand, within AO353_03340at 711.035 kb on + strand, within AO353_03340at 711.035 kb on + strand, within AO353_03340at 711.036 kb on - strand, within AO353_03340at 711.036 kb on - strand, within AO353_03340at 711.036 kb on - strand, within AO353_03340at 711.083 kb on + strand, within AO353_03340at 711.084 kb on - strand, within AO353_03340at 711.084 kb on - strand, within AO353_03340at 711.191 kb on + strand, within AO353_03340at 711.191 kb on + strand, within AO353_03340at 711.192 kb on - strand, within AO353_03340at 711.392 kb on + strand, within AO353_03340at 711.392 kb on + strand, within AO353_03340at 711.393 kb on - strand, within AO353_03340at 711.440 kb on + strand, within AO353_03340at 711.440 kb on + strand, within AO353_03340at 711.440 kb on + strand, within AO353_03340at 711.440 kb on + strand, within AO353_03340at 711.440 kb on + strand, within AO353_03340at 711.440 kb on + strand, within AO353_03340at 711.441 kb on - strand, within AO353_03340at 711.441 kb on - strand, within AO353_03340at 711.441 kb on - strand, within AO353_03340at 711.441 kb on - strand, within AO353_03340at 711.441 kb on - strand, within AO353_03340at 711.441 kb on - strand, within AO353_03340at 711.466 kb on + strand, within AO353_03340at 711.527 kb on + strand, within AO353_03340at 711.528 kb on - strand, within AO353_03340at 711.528 kb on - strand, within AO353_03340at 711.552 kb on + strand, within AO353_03340at 711.622 kb on + strand, within AO353_03340at 711.622 kb on + strand, within AO353_03340at 711.622 kb on + strand, within AO353_03340at 711.623 kb on - strand, within AO353_03340at 711.623 kb on - strand, within AO353_03340at 711.626 kb on + strand, within AO353_03340at 711.626 kb on + strand, within AO353_03340at 711.626 kb on + strand, within AO353_03340at 711.626 kb on + strand, within AO353_03340at 711.626 kb on + strand, within AO353_03340at 711.626 kb on + strand, within AO353_03340at 711.627 kb on - strand, within AO353_03340at 711.627 kb on - strand, within AO353_03340at 711.627 kb on - strand, within AO353_03340at 711.627 kb on - strand, within AO353_03340at 711.627 kb on - strand, within AO353_03340at 711.627 kb on - strand, within AO353_03340at 711.704 kb on + strand, within AO353_03340at 711.704 kb on + strand, within AO353_03340at 711.705 kb on - strand, within AO353_03340at 711.705 kb on - strand, within AO353_03340at 711.779 kb on + strand, within AO353_03340at 711.779 kb on + strand, within AO353_03340at 711.779 kb on + strand, within AO353_03340at 711.779 kb on + strand, within AO353_03340at 711.779 kb on + strand, within AO353_03340at 711.779 kb on + strand, within AO353_03340at 711.780 kb on - strand, within AO353_03340at 711.780 kb on - strand, within AO353_03340at 711.780 kb on - strand, within AO353_03340at 711.780 kb on - strand, within AO353_03340at 711.780 kb on - strand, within AO353_03340at 711.780 kb on - strand, within AO353_03340at 711.780 kb on - strand, within AO353_03340at 711.826 kb on + strandat 711.826 kb on + strandat 711.826 kb on + strandat 711.827 kb on - strandat 711.827 kb on - strandat 711.827 kb on - strandat 711.835 kb on + strandat 711.835 kb on + strandat 711.835 kb on + strandat 711.835 kb on + strandat 711.836 kb on - strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.939 kb on + strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 711.940 kb on - strandat 712.014 kb on + strand, within AO353_03345at 712.014 kb on + strand, within AO353_03345at 712.134 kb on + strand, within AO353_03345at 712.134 kb on + strand, within AO353_03345at 712.134 kb on + strand, within AO353_03345at 712.134 kb on + strand, within AO353_03345at 712.135 kb on - strand, within AO353_03345at 712.135 kb on - strand, within AO353_03345at 712.135 kb on - strand, within AO353_03345at 712.135 kb on - strand, within AO353_03345at 712.179 kb on + strand, within AO353_03345at 712.179 kb on + strand, within AO353_03345at 712.179 kb on + strand, within AO353_03345at 712.179 kb on + strand, within AO353_03345at 712.180 kb on - strand, within AO353_03345at 712.232 kb on + strand, within AO353_03345at 712.275 kb on + strand, within AO353_03345at 712.297 kb on + strand, within AO353_03345at 712.297 kb on + strand, within AO353_03345at 712.298 kb on - strand, within AO353_03345at 712.298 kb on - strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.344 kb on + strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.345 kb on - strand, within AO353_03345at 712.361 kb on - strand, within AO353_03345at 712.428 kb on + strand, within AO353_03345at 712.428 kb on + strand, within AO353_03345at 712.457 kb on - strand, within AO353_03345at 712.457 kb on - strand, within AO353_03345at 712.581 kb on + strand, within AO353_03345at 712.581 kb on + strand, within AO353_03345at 712.582 kb on - strandat 712.582 kb on - strandat 712.582 kb on - strandat 712.670 kb on + strandat 712.670 kb on + strandat 712.670 kb on + strandat 712.671 kb on - strandat 712.671 kb on - strandat 712.671 kb on - strandat 712.671 kb on - strandat 712.687 kb on - strandat 712.687 kb on - strandat 712.713 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.717 kb on + strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.718 kb on - strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.721 kb on + strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.722 kb on - strandat 712.731 kb on + strandat 712.732 kb on - strandat 712.732 kb on - strandat 712.732 kb on - strandat 712.732 kb on - strandat 712.859 kb on - strandat 712.859 kb on - strandat 712.905 kb on + strandat 712.971 kb on + strandat 712.971 kb on + strandat 712.971 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.982 kb on + strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.983 kb on - strandat 712.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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710,940 + AO353_03340 0.18 -2.6
710,940 + AO353_03340 0.18 +2.3
710,940 + AO353_03340 0.18 -1.1
710,941 - AO353_03340 0.18 +0.0
711,035 + AO353_03340 0.26 -2.4
711,035 + AO353_03340 0.26 +0.8
711,035 + AO353_03340 0.26 -0.1
711,035 + AO353_03340 0.26 -2.4
711,035 + AO353_03340 0.26 -2.6
711,035 + AO353_03340 0.26 +0.1
711,036 - AO353_03340 0.26 +0.4
711,036 - AO353_03340 0.26 +0.1
711,036 - AO353_03340 0.26 -1.1
711,083 + AO353_03340 0.30 +1.3
711,084 - AO353_03340 0.31 +0.4
711,084 - AO353_03340 0.31 +1.1
711,191 + AO353_03340 0.40 -0.3
711,191 + AO353_03340 0.40 -1.6
711,192 - AO353_03340 0.40 -1.6
711,392 + AO353_03340 0.57 -1.6
711,392 + AO353_03340 0.57 -0.1
711,393 - AO353_03340 0.57 +0.2
711,440 + AO353_03340 0.61 -0.1
711,440 + AO353_03340 0.61 +1.2
711,440 + AO353_03340 0.61 +0.8
711,440 + AO353_03340 0.61 +0.9
711,440 + AO353_03340 0.61 -2.4
711,440 + AO353_03340 0.61 -1.9
711,441 - AO353_03340 0.61 -2.9
711,441 - AO353_03340 0.61 -0.5
711,441 - AO353_03340 0.61 -0.1
711,441 - AO353_03340 0.61 -1.1
711,441 - AO353_03340 0.61 -1.4
711,441 - AO353_03340 0.61 -2.6
711,466 + AO353_03340 0.63 -2.4
711,527 + AO353_03340 0.68 -0.1
711,528 - AO353_03340 0.68 +0.1
711,528 - AO353_03340 0.68 -1.1
711,552 + AO353_03340 0.70 -1.6
711,622 + AO353_03340 0.76 -1.6
711,622 + AO353_03340 0.76 -0.1
711,622 + AO353_03340 0.76 +0.8
711,623 - AO353_03340 0.76 -1.4
711,623 - AO353_03340 0.76 -0.1
711,626 + AO353_03340 0.76 +2.3
711,626 + AO353_03340 0.76 +0.8
711,626 + AO353_03340 0.76 -2.4
711,626 + AO353_03340 0.76 +2.2
711,626 + AO353_03340 0.76 -1.6
711,626 + AO353_03340 0.76 +0.6
711,627 - AO353_03340 0.76 -2.1
711,627 - AO353_03340 0.76 -1.1
711,627 - AO353_03340 0.76 -0.3
711,627 - AO353_03340 0.76 +0.7
711,627 - AO353_03340 0.76 +0.9
711,627 - AO353_03340 0.76 +0.5
711,704 + AO353_03340 0.83 -2.6
711,704 + AO353_03340 0.83 -1.1
711,705 - AO353_03340 0.83 -0.1
711,705 - AO353_03340 0.83 +1.4
711,779 + AO353_03340 0.89 -0.1
711,779 + AO353_03340 0.89 +0.8
711,779 + AO353_03340 0.89 -0.5
711,779 + AO353_03340 0.89 -0.2
711,779 + AO353_03340 0.89 -1.1
711,779 + AO353_03340 0.89 +0.9
711,780 - AO353_03340 0.89 -3.4
711,780 - AO353_03340 0.89 -3.2
711,780 - AO353_03340 0.89 -2.4
711,780 - AO353_03340 0.89 +1.9
711,780 - AO353_03340 0.89 +0.5
711,780 - AO353_03340 0.89 -1.6
711,780 - AO353_03340 0.89 -0.1
711,826 + +0.1
711,826 + -1.6
711,826 + -0.1
711,827 - -1.1
711,827 - -2.1
711,827 - -1.1
711,835 + -0.6
711,835 + -2.6
711,835 + +2.1
711,835 + -2.4
711,836 - -1.1
711,939 + -0.1
711,939 + +1.5
711,939 + +0.2
711,939 + -0.9
711,939 + -0.8
711,939 + +0.6
711,939 + -2.9
711,939 + -1.6
711,939 + -1.6
711,939 + -0.1
711,939 + +1.9
711,939 + +1.3
711,939 + +0.3
711,939 + +0.4
711,939 + -1.5
711,939 + -1.6
711,939 + -2.4
711,939 + -2.1
711,939 + -1.6
711,939 + -1.9
711,939 + +1.3
711,939 + +1.5
711,939 + +2.9
711,939 + -0.9
711,939 + -1.1
711,939 + -1.6
711,939 + -0.1
711,939 + +0.3
711,940 - +2.2
711,940 - -0.3
711,940 - +2.1
711,940 - +1.5
711,940 - -2.1
711,940 - +0.8
711,940 - -0.1
711,940 - -0.6
711,940 - -2.1
711,940 - -0.8
711,940 - -0.1
711,940 - -1.1
711,940 - +1.4
711,940 - -1.6
711,940 - -1.1
711,940 - -0.1
711,940 - +2.4
711,940 - +1.4
711,940 - -0.9
711,940 - -1.1
711,940 - -1.1
711,940 - +0.2
711,940 - -0.1
711,940 - +0.5
712,014 + AO353_03345 0.12 +1.7
712,014 + AO353_03345 0.12 -1.6
712,134 + AO353_03345 0.28 -2.1
712,134 + AO353_03345 0.28 +0.9
712,134 + AO353_03345 0.28 -1.6
712,134 + AO353_03345 0.28 -2.4
712,135 - AO353_03345 0.28 -3.8
712,135 - AO353_03345 0.28 -0.5
712,135 - AO353_03345 0.28 +0.9
712,135 - AO353_03345 0.28 +2.9
712,179 + AO353_03345 0.34 -1.6
712,179 + AO353_03345 0.34 -2.4
712,179 + AO353_03345 0.34 +2.3
712,179 + AO353_03345 0.34 -3.2
712,180 - AO353_03345 0.35 +0.5
712,232 + AO353_03345 0.42 -0.1
712,275 + AO353_03345 0.48 -2.4
712,297 + AO353_03345 0.51 +2.9
712,297 + AO353_03345 0.51 -0.3
712,298 - AO353_03345 0.51 -0.1
712,298 - AO353_03345 0.51 +1.9
712,344 + AO353_03345 0.57 -1.1
712,344 + AO353_03345 0.57 -1.6
712,344 + AO353_03345 0.57 +1.8
712,344 + AO353_03345 0.57 -1.6
712,344 + AO353_03345 0.57 -2.1
712,344 + AO353_03345 0.57 -1.6
712,344 + AO353_03345 0.57 +0.2
712,344 + AO353_03345 0.57 -3.2
712,344 + AO353_03345 0.57 +0.7
712,345 - AO353_03345 0.57 -0.1
712,345 - AO353_03345 0.57 -1.1
712,345 - AO353_03345 0.57 +2.9
712,345 - AO353_03345 0.57 -2.4
712,345 - AO353_03345 0.57 -3.1
712,345 - AO353_03345 0.57 -1.1
712,345 - AO353_03345 0.57 +1.3
712,345 - AO353_03345 0.57 -2.1
712,345 - AO353_03345 0.57 -0.1
712,361 - AO353_03345 0.60 -3.2
712,428 + AO353_03345 0.69 -2.9
712,428 + AO353_03345 0.69 +0.1
712,457 - AO353_03345 0.73 -0.1
712,457 - AO353_03345 0.73 -0.1
712,581 + AO353_03345 0.90 -1.1
712,581 + AO353_03345 0.90 +0.8
712,582 - -1.6
712,582 - -1.6
712,582 - -2.6
712,670 + +2.8
712,670 + +0.6
712,670 + +0.3
712,671 - -0.1
712,671 - -2.4
712,671 - -1.6
712,671 - +0.5
712,687 - -0.1
712,687 - -2.9
712,713 + -0.9
712,717 + -0.8
712,717 + -1.6
712,717 + +0.8
712,717 + -1.1
712,717 + -0.1
712,717 + -3.1
712,717 + -0.1
712,717 + -2.4
712,717 + -1.6
712,717 + -1.1
712,717 + -1.6
712,717 + -1.1
712,717 + +0.9
712,717 + +0.9
712,717 + -1.1
712,717 + -2.9
712,717 + +0.4
712,717 + -1.6
712,717 + -0.1
712,717 + -0.9
712,717 + -0.6
712,717 + -0.1
712,717 + +0.7
712,717 + +2.9
712,717 + -1.3
712,717 + -1.6
712,717 + -1.1
712,717 + -0.6
712,717 + +1.4
712,717 + +0.5
712,717 + -0.1
712,717 + -0.1
712,717 + +0.9
712,717 + -1.1
712,717 + -0.4
712,717 + +0.8
712,717 + -0.1
712,717 + -0.1
712,717 + -1.6
712,718 - +0.4
712,718 - -1.6
712,718 - -1.1
712,718 - +0.9
712,718 - -0.1
712,718 - -0.8
712,718 - +0.4
712,718 - +1.7
712,718 - -0.2
712,718 - -1.1
712,718 - +0.9
712,718 - -2.6
712,718 - +1.8
712,718 - +2.7
712,718 - -1.1
712,718 - +1.9
712,718 - -2.4
712,718 - -1.1
712,718 - +0.4
712,718 - -0.4
712,718 - -0.1
712,718 - -1.1
712,718 - +0.8
712,718 - -1.6
712,718 - -0.5
712,718 - -1.6
712,718 - -1.6
712,718 - -0.1
712,718 - -2.4
712,718 - +1.2
712,718 - -0.1
712,718 - +1.5
712,718 - -0.1
712,718 - -2.1
712,718 - +3.4
712,718 - +0.4
712,718 - +1.1
712,718 - +1.9
712,718 - -1.1
712,718 - -0.1
712,718 - +1.8
712,721 + -1.1
712,721 + +0.8
712,721 + +1.3
712,721 + -2.4
712,721 + -1.1
712,721 + +0.6
712,721 + -0.4
712,721 + +0.4
712,721 + +0.9
712,721 + -1.6
712,721 + -0.8
712,721 + -0.1
712,721 + +0.2
712,721 + -1.1
712,721 + -0.3
712,722 - -2.6
712,722 - +0.4
712,722 - -3.1
712,722 - -0.6
712,722 - -1.1
712,722 - +1.8
712,722 - -0.1
712,722 - +1.5
712,722 - -0.1
712,722 - -0.1
712,722 - -3.2
712,722 - +1.1
712,722 - -0.6
712,722 - -2.9
712,722 - +0.7
712,722 - -0.6
712,731 + -1.1
712,732 - -0.1
712,732 - -1.1
712,732 - +1.8
712,732 - +1.5
712,859 - +1.6
712,859 - -1.1
712,905 + +1.5
712,971 + +2.5
712,971 + -0.1
712,971 + +0.7
712,982 + -1.1
712,982 + -2.4
712,982 + -0.1
712,982 + -0.7
712,982 + -0.1
712,982 + +0.8
712,982 + +1.2
712,982 + -0.1
712,982 + -2.4
712,982 + +0.7
712,982 + -1.6
712,983 - -1.1
712,983 - +3.6
712,983 - -1.1
712,983 - -0.4
712,983 - +2.2
712,983 - -1.1
712,983 - -0.4
712,983 - -2.4
712,983 - +1.9
712,998 - -2.4

Or see this region's nucleotide sequence