Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01560 and AO353_01565 are separated by 29 nucleotides AO353_01565 and AO353_01570 overlap by 4 nucleotides
AO353_01560: AO353_01560 - type II secretion system protein, at 332,666 to 333,628
_01560
AO353_01565: AO353_01565 - secretion system protein, at 333,658 to 334,644
_01565
AO353_01570: AO353_01570 - pilus assembly protein CpaF, at 334,641 to 336,083
_01570
Position (kb) 333
334
335 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 332.662 kb on + strand at 332.662 kb on + strand at 332.662 kb on + strand at 332.663 kb on - strand at 332.663 kb on - strand at 332.663 kb on - strand at 332.753 kb on + strand at 332.754 kb on - strand at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.264 kb on - strand, within AO353_01560 at 333.294 kb on + strand, within AO353_01560 at 333.294 kb on + strand, within AO353_01560 at 333.294 kb on + strand, within AO353_01560 at 333.294 kb on + strand, within AO353_01560 at 333.294 kb on + strand, within AO353_01560 at 333.295 kb on - strand, within AO353_01560 at 333.295 kb on - strand, within AO353_01560 at 333.295 kb on - strand, within AO353_01560 at 333.295 kb on - strand, within AO353_01560 at 333.295 kb on - strand, within AO353_01560 at 333.515 kb on + strand, within AO353_01560 at 333.515 kb on + strand, within AO353_01560 at 333.541 kb on + strand at 333.542 kb on - strand at 333.621 kb on + strand at 333.621 kb on + strand at 333.621 kb on + strand at 333.621 kb on + strand at 333.622 kb on - strand at 333.622 kb on - strand at 333.622 kb on - strand at 333.622 kb on - strand at 333.659 kb on + strand at 333.660 kb on - strand at 333.771 kb on - strand, within AO353_01565 at 333.771 kb on - strand, within AO353_01565 at 333.907 kb on + strand, within AO353_01565 at 333.907 kb on + strand, within AO353_01565 at 333.907 kb on + strand, within AO353_01565 at 333.908 kb on - strand, within AO353_01565 at 333.919 kb on + strand, within AO353_01565 at 333.920 kb on - strand, within AO353_01565 at 334.040 kb on + strand, within AO353_01565 at 334.040 kb on + strand, within AO353_01565 at 334.040 kb on + strand, within AO353_01565 at 334.040 kb on + strand, within AO353_01565 at 334.040 kb on + strand, within AO353_01565 at 334.040 kb on + strand, within AO353_01565 at 334.041 kb on - strand, within AO353_01565 at 334.041 kb on - strand at 334.041 kb on - strand, within AO353_01565 at 334.041 kb on - strand, within AO353_01565 at 334.041 kb on - strand, within AO353_01565 at 334.355 kb on + strand, within AO353_01565 at 334.398 kb on + strand, within AO353_01565 at 334.398 kb on + strand, within AO353_01565 at 334.398 kb on + strand, within AO353_01565 at 334.398 kb on + strand, within AO353_01565 at 334.399 kb on - strand, within AO353_01565 at 334.399 kb on - strand, within AO353_01565 at 334.399 kb on - strand, within AO353_01565 at 334.448 kb on + strand, within AO353_01565 at 334.449 kb on - strand, within AO353_01565 at 334.463 kb on - strand, within AO353_01565 at 334.473 kb on + strand, within AO353_01565 at 334.473 kb on + strand, within AO353_01565 at 334.473 kb on + strand, within AO353_01565 at 334.474 kb on - strand, within AO353_01565 at 334.474 kb on - strand, within AO353_01565 at 334.474 kb on - strand, within AO353_01565 at 334.633 kb on + strand at 334.633 kb on + strand at 334.633 kb on + strand at 334.633 kb on + strand at 334.634 kb on - strand at 334.634 kb on - strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.635 kb on + strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 334.636 kb on - strand at 335.328 kb on + strand, within AO353_01570 at 335.328 kb on + strand, within AO353_01570 at 335.328 kb on + strand, within AO353_01570 at 335.328 kb on + strand, within AO353_01570 at 335.328 kb on + strand, within AO353_01570 at 335.328 kb on + strand, within AO353_01570 at 335.329 kb on - strand, within AO353_01570 at 335.329 kb on - strand, within AO353_01570 at 335.329 kb on - strand, within AO353_01570 at 335.329 kb on - strand, within AO353_01570 at 335.329 kb on - strand, within AO353_01570 at 335.329 kb on - strand, within AO353_01570 at 335.478 kb on - strand, within AO353_01570 at 335.478 kb on - strand, within AO353_01570 at 335.478 kb on - strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570 at 335.644 kb on + strand, within AO353_01570
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 332,662 + -2.7 332,662 + -1.1 332,662 + +2.0 332,663 - -1.9 332,663 - +0.4 332,663 - -1.1 332,753 + +1.1 332,754 - +1.3 332,826 + AO353_01560 0.17 -0.1 332,826 + AO353_01560 0.17 -0.5 332,826 + AO353_01560 0.17 +0.1 332,826 + AO353_01560 0.17 +0.0 332,826 + AO353_01560 0.17 -0.6 332,826 + AO353_01560 0.17 -0.3 332,826 + AO353_01560 0.17 +0.4 332,826 + AO353_01560 0.17 -2.1 332,826 + AO353_01560 0.17 +0.3 332,826 + AO353_01560 0.17 -2.5 332,826 + AO353_01560 0.17 -1.1 332,827 - AO353_01560 0.17 -1.7 332,827 - AO353_01560 0.17 +0.5 332,827 - AO353_01560 0.17 +2.2 332,827 - AO353_01560 0.17 +0.9 332,827 - AO353_01560 0.17 +1.3 332,827 - AO353_01560 0.17 +1.7 332,827 - AO353_01560 0.17 +1.9 332,827 - AO353_01560 0.17 +2.4 333,150 + AO353_01560 0.50 -2.7 333,150 + AO353_01560 0.50 +1.1 333,150 + AO353_01560 0.50 -2.7 333,150 + AO353_01560 0.50 -1.7 333,150 + AO353_01560 0.50 +1.8 333,150 + AO353_01560 0.50 -0.1 333,150 + AO353_01560 0.50 +1.0 333,150 + AO353_01560 0.50 -2.9 333,150 + AO353_01560 0.50 -1.1 333,150 + AO353_01560 0.50 -1.7 333,150 + AO353_01560 0.50 -1.1 333,150 + AO353_01560 0.50 -2.1 333,150 + AO353_01560 0.50 -0.1 333,150 + AO353_01560 0.50 +1.4 333,150 + AO353_01560 0.50 -1.7 333,151 - AO353_01560 0.50 -1.1 333,151 - AO353_01560 0.50 +1.7 333,151 - AO353_01560 0.50 -1.1 333,151 - AO353_01560 0.50 +1.2 333,151 - AO353_01560 0.50 -0.1 333,151 - AO353_01560 0.50 -1.1 333,151 - AO353_01560 0.50 -1.1 333,151 - AO353_01560 0.50 +3.0 333,151 - AO353_01560 0.50 -2.1 333,151 - AO353_01560 0.50 +5.3 333,151 - AO353_01560 0.50 -2.1 333,151 - AO353_01560 0.50 +1.9 333,151 - AO353_01560 0.50 -1.1 333,151 - AO353_01560 0.50 -0.9 333,151 - AO353_01560 0.50 -0.6 333,151 - AO353_01560 0.50 +1.9 333,264 - AO353_01560 0.62 -0.1 333,294 + AO353_01560 0.65 +0.3 333,294 + AO353_01560 0.65 +1.4 333,294 + AO353_01560 0.65 +4.1 333,294 + AO353_01560 0.65 -0.1 333,294 + AO353_01560 0.65 +0.5 333,295 - AO353_01560 0.65 -1.1 333,295 - AO353_01560 0.65 +1.3 333,295 - AO353_01560 0.65 -2.7 333,295 - AO353_01560 0.65 -1.1 333,295 - AO353_01560 0.65 +1.4 333,515 + AO353_01560 0.88 -1.5 333,515 + AO353_01560 0.88 +0.2 333,541 + -1.1 333,542 - -0.1 333,621 + -1.7 333,621 + +0.7 333,621 + +0.9 333,621 + +0.9 333,622 - +1.3 333,622 - -1.1 333,622 - -2.1 333,622 - +3.2 333,659 + -0.7 333,660 - -2.1 333,771 - AO353_01565 0.11 +1.3 333,771 - AO353_01565 0.11 -2.1 333,907 + AO353_01565 0.25 -1.7 333,907 + AO353_01565 0.25 +1.4 333,907 + AO353_01565 0.25 -0.1 333,908 - AO353_01565 0.25 -1.7 333,919 + AO353_01565 0.26 +0.3 333,920 - AO353_01565 0.27 -1.7 334,040 + AO353_01565 0.39 -2.3 334,040 + AO353_01565 0.39 -1.9 334,040 + AO353_01565 0.39 -1.9 334,040 + AO353_01565 0.39 -2.7 334,040 + AO353_01565 0.39 +1.2 334,040 + AO353_01565 0.39 -0.1 334,041 - AO353_01565 0.39 -2.7 334,041 - -1.1 334,041 - AO353_01565 0.39 -1.5 334,041 - AO353_01565 0.39 +0.0 334,041 - AO353_01565 0.39 -1.7 334,355 + AO353_01565 0.71 -1.7 334,398 + AO353_01565 0.75 +2.6 334,398 + AO353_01565 0.75 -1.7 334,398 + AO353_01565 0.75 -2.7 334,398 + AO353_01565 0.75 +0.4 334,399 - AO353_01565 0.75 -1.7 334,399 - AO353_01565 0.75 -1.7 334,399 - AO353_01565 0.75 -1.7 334,448 + AO353_01565 0.80 -0.1 334,449 - AO353_01565 0.80 -1.1 334,463 - AO353_01565 0.82 -1.1 334,473 + AO353_01565 0.83 -1.1 334,473 + AO353_01565 0.83 +1.4 334,473 + AO353_01565 0.83 -0.8 334,474 - AO353_01565 0.83 -0.1 334,474 - AO353_01565 0.83 -0.1 334,474 - AO353_01565 0.83 -0.1 334,633 + -2.1 334,633 + -1.1 334,633 + +0.9 334,633 + -1.4 334,634 - +0.4 334,634 - +4.4 334,635 + -2.1 334,635 + -1.1 334,635 + +2.4 334,635 + -1.7 334,635 + -0.1 334,635 + -0.3 334,635 + +2.0 334,635 + -2.1 334,635 + -1.1 334,635 + -0.6 334,635 + +1.4 334,635 + -0.1 334,636 - -0.1 334,636 - +1.7 334,636 - -4.2 334,636 - +1.0 334,636 - -0.7 334,636 - -0.1 334,636 - +2.2 334,636 - -2.1 334,636 - +2.2 334,636 - -0.1 334,636 - -0.6 334,636 - +1.3 334,636 - -0.1 334,636 - -0.7 334,636 - -2.9 334,636 - +1.8 334,636 - +0.3 334,636 - +0.1 334,636 - -2.1 334,636 - -2.1 334,636 - +2.9 334,636 - -1.1 334,636 - -3.7 334,636 - -1.7 334,636 - -1.1 334,636 - -2.9 335,328 + AO353_01570 0.48 +1.2 335,328 + AO353_01570 0.48 -1.1 335,328 + AO353_01570 0.48 +1.9 335,328 + AO353_01570 0.48 -1.1 335,328 + AO353_01570 0.48 +0.5 335,328 + AO353_01570 0.48 +0.9 335,329 - AO353_01570 0.48 +1.9 335,329 - AO353_01570 0.48 +0.7 335,329 - AO353_01570 0.48 -2.5 335,329 - AO353_01570 0.48 -0.1 335,329 - AO353_01570 0.48 -2.1 335,329 - AO353_01570 0.48 -1.5 335,478 - AO353_01570 0.58 +0.3 335,478 - AO353_01570 0.58 +2.0 335,478 - AO353_01570 0.58 -1.1 335,644 + AO353_01570 0.70 -0.1 335,644 + AO353_01570 0.70 -2.5 335,644 + AO353_01570 0.70 -1.1 335,644 + AO353_01570 0.70 +0.3 335,644 + AO353_01570 0.70 +1.2 335,644 + AO353_01570 0.70 -1.7 335,644 + AO353_01570 0.70 -1.7 335,644 + AO353_01570 0.70 -0.1 335,644 + AO353_01570 0.70 -1.1
Or see this region's nucleotide sequence