Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21485

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21480 and ABZR86_RS21485 overlap by 14 nucleotidesABZR86_RS21485 and ABZR86_RS21490 are separated by 270 nucleotidesABZR86_RS21490 and ABZR86_RS21495 are separated by 3 nucleotides ABZR86_RS21480: ABZR86_RS21480 - arginase family protein, at 263,265 to 264,140 _RS21480 ABZR86_RS21485: ABZR86_RS21485 - GNAT family N-acetyltransferase, at 264,127 to 265,194 _RS21485 ABZR86_RS21490: ABZR86_RS21490 - phosphopantetheine-binding protein, at 265,465 to 265,716 _RS21490 ABZR86_RS21495: ABZR86_RS21495 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 265,720 to 266,934 _RS21495 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1at 263.161 kb on + strandat 263.513 kb on + strand, within ABZR86_RS21480at 263.526 kb on - strand, within ABZR86_RS21480at 263.560 kb on + strand, within ABZR86_RS21480at 263.560 kb on + strand, within ABZR86_RS21480at 263.560 kb on + strand, within ABZR86_RS21480at 263.561 kb on - strand, within ABZR86_RS21480at 263.561 kb on - strand, within ABZR86_RS21480at 263.693 kb on - strand, within ABZR86_RS21480at 263.693 kb on - strand, within ABZR86_RS21480at 263.725 kb on + strand, within ABZR86_RS21480at 263.726 kb on - strand, within ABZR86_RS21480at 263.726 kb on - strand, within ABZR86_RS21480at 263.726 kb on - strand, within ABZR86_RS21480at 263.726 kb on - strand, within ABZR86_RS21480at 263.726 kb on - strand, within ABZR86_RS21480at 263.878 kb on - strand, within ABZR86_RS21480at 264.266 kb on + strand, within ABZR86_RS21485at 264.267 kb on - strand, within ABZR86_RS21485at 264.267 kb on - strand, within ABZR86_RS21485at 264.302 kb on + strand, within ABZR86_RS21485at 264.303 kb on - strand, within ABZR86_RS21485at 264.303 kb on - strand, within ABZR86_RS21485at 264.303 kb on - strand, within ABZR86_RS21485at 264.359 kb on + strand, within ABZR86_RS21485at 264.359 kb on + strand, within ABZR86_RS21485at 264.359 kb on + strand, within ABZR86_RS21485at 264.360 kb on - strand, within ABZR86_RS21485at 264.360 kb on - strand, within ABZR86_RS21485at 264.387 kb on - strand, within ABZR86_RS21485at 264.401 kb on + strand, within ABZR86_RS21485at 264.402 kb on - strand, within ABZR86_RS21485at 264.402 kb on - strand, within ABZR86_RS21485at 264.471 kb on - strand, within ABZR86_RS21485at 264.563 kb on + strand, within ABZR86_RS21485at 264.564 kb on - strand, within ABZR86_RS21485at 264.564 kb on - strand, within ABZR86_RS21485at 264.575 kb on + strand, within ABZR86_RS21485at 264.576 kb on - strand, within ABZR86_RS21485at 264.584 kb on + strand, within ABZR86_RS21485at 264.584 kb on + strand, within ABZR86_RS21485at 264.584 kb on + strand, within ABZR86_RS21485at 264.585 kb on - strand, within ABZR86_RS21485at 264.585 kb on - strand, within ABZR86_RS21485at 264.585 kb on - strand, within ABZR86_RS21485at 264.716 kb on + strand, within ABZR86_RS21485at 264.716 kb on + strand, within ABZR86_RS21485at 264.749 kb on + strand, within ABZR86_RS21485at 264.749 kb on + strand, within ABZR86_RS21485at 264.750 kb on - strand, within ABZR86_RS21485at 264.750 kb on - strand, within ABZR86_RS21485at 264.750 kb on - strand, within ABZR86_RS21485at 264.750 kb on - strand, within ABZR86_RS21485at 264.779 kb on + strand, within ABZR86_RS21485at 264.779 kb on + strand, within ABZR86_RS21485at 264.780 kb on - strand, within ABZR86_RS21485at 265.188 kb on - strandat 265.188 kb on - strandat 265.188 kb on - strandat 265.295 kb on - strandat 265.946 kb on - strand, within ABZR86_RS21495at 266.072 kb on - strand, within ABZR86_RS21495at 266.072 kb on - strand, within ABZR86_RS21495at 266.083 kb on + strand, within ABZR86_RS21495

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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263,161 + +0.5
263,513 + ABZR86_RS21480 0.28 -1.5
263,526 - ABZR86_RS21480 0.30 -1.2
263,560 + ABZR86_RS21480 0.34 -2.0
263,560 + ABZR86_RS21480 0.34 -2.5
263,560 + ABZR86_RS21480 0.34 -2.5
263,561 - ABZR86_RS21480 0.34 -1.9
263,561 - ABZR86_RS21480 0.34 -1.9
263,693 - ABZR86_RS21480 0.49 -2.8
263,693 - ABZR86_RS21480 0.49 -0.6
263,725 + ABZR86_RS21480 0.53 -0.2
263,726 - ABZR86_RS21480 0.53 -0.8
263,726 - ABZR86_RS21480 0.53 -1.9
263,726 - ABZR86_RS21480 0.53 -2.4
263,726 - ABZR86_RS21480 0.53 -0.7
263,726 - ABZR86_RS21480 0.53 -1.2
263,878 - ABZR86_RS21480 0.70 -2.3
264,266 + ABZR86_RS21485 0.13 -0.9
264,267 - ABZR86_RS21485 0.13 -0.4
264,267 - ABZR86_RS21485 0.13 +0.8
264,302 + ABZR86_RS21485 0.16 -1.0
264,303 - ABZR86_RS21485 0.16 -0.0
264,303 - ABZR86_RS21485 0.16 -0.7
264,303 - ABZR86_RS21485 0.16 -0.2
264,359 + ABZR86_RS21485 0.22 -1.1
264,359 + ABZR86_RS21485 0.22 -1.8
264,359 + ABZR86_RS21485 0.22 +0.4
264,360 - ABZR86_RS21485 0.22 -0.4
264,360 - ABZR86_RS21485 0.22 +0.2
264,387 - ABZR86_RS21485 0.24 -0.9
264,401 + ABZR86_RS21485 0.26 -1.2
264,402 - ABZR86_RS21485 0.26 +0.0
264,402 - ABZR86_RS21485 0.26 +0.4
264,471 - ABZR86_RS21485 0.32 +0.1
264,563 + ABZR86_RS21485 0.41 +0.1
264,564 - ABZR86_RS21485 0.41 -1.8
264,564 - ABZR86_RS21485 0.41 +0.4
264,575 + ABZR86_RS21485 0.42 -0.5
264,576 - ABZR86_RS21485 0.42 -1.3
264,584 + ABZR86_RS21485 0.43 +0.2
264,584 + ABZR86_RS21485 0.43 -0.5
264,584 + ABZR86_RS21485 0.43 -0.0
264,585 - ABZR86_RS21485 0.43 -0.5
264,585 - ABZR86_RS21485 0.43 +0.5
264,585 - ABZR86_RS21485 0.43 -1.1
264,716 + ABZR86_RS21485 0.55 -0.7
264,716 + ABZR86_RS21485 0.55 -0.3
264,749 + ABZR86_RS21485 0.58 -1.0
264,749 + ABZR86_RS21485 0.58 +0.0
264,750 - ABZR86_RS21485 0.58 -0.6
264,750 - ABZR86_RS21485 0.58 -0.4
264,750 - ABZR86_RS21485 0.58 -2.2
264,750 - ABZR86_RS21485 0.58 -0.8
264,779 + ABZR86_RS21485 0.61 -0.3
264,779 + ABZR86_RS21485 0.61 -0.1
264,780 - ABZR86_RS21485 0.61 +0.4
265,188 - -0.5
265,188 - +0.2
265,188 - +0.2
265,295 - +0.2
265,946 - ABZR86_RS21495 0.19 +0.3
266,072 - ABZR86_RS21495 0.29 -0.1
266,072 - ABZR86_RS21495 0.29 -0.7
266,083 + ABZR86_RS21495 0.30 -0.1

Or see this region's nucleotide sequence