Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19345

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19335 and ABZR86_RS19340 are separated by 74 nucleotidesABZR86_RS19340 and ABZR86_RS19345 are separated by 174 nucleotidesABZR86_RS19345 and ABZR86_RS19350 overlap by 17 nucleotides ABZR86_RS19335: ABZR86_RS19335 - adenine phosphoribosyltransferase, at 329,268 to 329,798 _RS19335 ABZR86_RS19340: ABZR86_RS19340 - peptide-methionine (S)-S-oxide reductase MsrA, at 329,873 to 330,526 _RS19340 ABZR86_RS19345: ABZR86_RS19345 - formyl transferase, at 330,701 to 331,471 _RS19345 ABZR86_RS19350: ABZR86_RS19350 - polysaccharide deacetylase family protein, at 331,455 to 332,444 _RS19350 Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1 2at 329.769 kb on - strandat 329.970 kb on + strand, within ABZR86_RS19340at 329.970 kb on + strand, within ABZR86_RS19340at 329.970 kb on + strand, within ABZR86_RS19340at 330.099 kb on - strand, within ABZR86_RS19340at 330.110 kb on + strand, within ABZR86_RS19340at 330.182 kb on + strand, within ABZR86_RS19340at 330.182 kb on + strand, within ABZR86_RS19340at 330.183 kb on - strand, within ABZR86_RS19340at 330.299 kb on + strand, within ABZR86_RS19340at 330.299 kb on + strand, within ABZR86_RS19340at 330.300 kb on - strand, within ABZR86_RS19340at 330.300 kb on - strand, within ABZR86_RS19340at 330.300 kb on - strand, within ABZR86_RS19340at 330.300 kb on - strand, within ABZR86_RS19340at 330.301 kb on + strand, within ABZR86_RS19340at 330.301 kb on + strand, within ABZR86_RS19340at 330.301 kb on + strand, within ABZR86_RS19340at 330.302 kb on - strand, within ABZR86_RS19340at 330.302 kb on - strand, within ABZR86_RS19340at 330.302 kb on - strand, within ABZR86_RS19340at 330.419 kb on + strand, within ABZR86_RS19340at 330.420 kb on - strand, within ABZR86_RS19340at 330.422 kb on + strand, within ABZR86_RS19340at 330.446 kb on + strand, within ABZR86_RS19340at 330.446 kb on + strand, within ABZR86_RS19340at 330.446 kb on + strand, within ABZR86_RS19340at 330.446 kb on + strand, within ABZR86_RS19340at 330.608 kb on + strandat 330.608 kb on + strandat 330.608 kb on + strandat 330.608 kb on + strandat 330.608 kb on + strandat 330.609 kb on - strandat 330.609 kb on - strandat 330.756 kb on + strandat 330.756 kb on + strandat 330.757 kb on - strandat 330.757 kb on - strandat 330.757 kb on - strandat 330.867 kb on + strand, within ABZR86_RS19345at 330.894 kb on - strand, within ABZR86_RS19345at 330.912 kb on + strand, within ABZR86_RS19345at 331.039 kb on + strand, within ABZR86_RS19345at 331.039 kb on + strand, within ABZR86_RS19345at 331.039 kb on + strand, within ABZR86_RS19345at 331.039 kb on + strand, within ABZR86_RS19345at 331.045 kb on + strand, within ABZR86_RS19345at 331.046 kb on - strand, within ABZR86_RS19345at 331.112 kb on + strand, within ABZR86_RS19345at 331.410 kb on + strandat 331.410 kb on + strandat 331.410 kb on + strandat 331.410 kb on + strandat 331.410 kb on + strandat 331.410 kb on + strandat 331.410 kb on + strandat 331.410 kb on + strandat 331.411 kb on - strandat 331.411 kb on - strandat 331.411 kb on - strandat 331.411 kb on - strandat 331.411 kb on - strandat 331.457 kb on - strandat 331.540 kb on + strandat 331.546 kb on + strandat 331.547 kb on - strandat 331.547 kb on - strandat 331.547 kb on - strandat 331.589 kb on + strand, within ABZR86_RS19350at 331.715 kb on - strand, within ABZR86_RS19350at 331.742 kb on + strand, within ABZR86_RS19350at 331.743 kb on - strand, within ABZR86_RS19350at 331.780 kb on + strand, within ABZR86_RS19350at 331.780 kb on + strand, within ABZR86_RS19350at 331.805 kb on + strand, within ABZR86_RS19350at 331.806 kb on - strand, within ABZR86_RS19350at 331.807 kb on + strand, within ABZR86_RS19350at 331.807 kb on + strand, within ABZR86_RS19350at 331.808 kb on - strand, within ABZR86_RS19350at 331.870 kb on + strand, within ABZR86_RS19350at 331.870 kb on + strand, within ABZR86_RS19350at 331.870 kb on + strand, within ABZR86_RS19350at 331.871 kb on - strand, within ABZR86_RS19350at 331.934 kb on - strand, within ABZR86_RS19350at 331.934 kb on - strand, within ABZR86_RS19350at 331.934 kb on - strand, within ABZR86_RS19350at 332.063 kb on - strand, within ABZR86_RS19350at 332.066 kb on - strand, within ABZR86_RS19350at 332.104 kb on + strand, within ABZR86_RS19350at 332.104 kb on + strand, within ABZR86_RS19350at 332.105 kb on - strand, within ABZR86_RS19350at 332.143 kb on + strand, within ABZR86_RS19350at 332.182 kb on + strand, within ABZR86_RS19350at 332.189 kb on - strand, within ABZR86_RS19350at 332.263 kb on + strand, within ABZR86_RS19350at 332.264 kb on - strand, within ABZR86_RS19350at 332.264 kb on - strand, within ABZR86_RS19350at 332.369 kb on - strandat 332.369 kb on - strandat 332.369 kb on - strandat 332.404 kb on + strandat 332.405 kb on - strandat 332.405 kb on - strandat 332.405 kb on - strandat 332.455 kb on + strandat 332.455 kb on + strandat 332.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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329,769 - -0.2
329,970 + ABZR86_RS19340 0.15 +0.3
329,970 + ABZR86_RS19340 0.15 -1.6
329,970 + ABZR86_RS19340 0.15 +0.8
330,099 - ABZR86_RS19340 0.35 -0.1
330,110 + ABZR86_RS19340 0.36 +0.3
330,182 + ABZR86_RS19340 0.47 +0.0
330,182 + ABZR86_RS19340 0.47 -0.3
330,183 - ABZR86_RS19340 0.47 -0.0
330,299 + ABZR86_RS19340 0.65 +0.3
330,299 + ABZR86_RS19340 0.65 -0.2
330,300 - ABZR86_RS19340 0.65 +0.1
330,300 - ABZR86_RS19340 0.65 +0.0
330,300 - ABZR86_RS19340 0.65 +0.9
330,300 - ABZR86_RS19340 0.65 +0.4
330,301 + ABZR86_RS19340 0.65 -0.9
330,301 + ABZR86_RS19340 0.65 -0.3
330,301 + ABZR86_RS19340 0.65 +1.3
330,302 - ABZR86_RS19340 0.66 +0.5
330,302 - ABZR86_RS19340 0.66 -1.6
330,302 - ABZR86_RS19340 0.66 -0.0
330,419 + ABZR86_RS19340 0.83 -0.2
330,420 - ABZR86_RS19340 0.84 -0.3
330,422 + ABZR86_RS19340 0.84 -0.2
330,446 + ABZR86_RS19340 0.88 -0.2
330,446 + ABZR86_RS19340 0.88 +1.6
330,446 + ABZR86_RS19340 0.88 +1.0
330,446 + ABZR86_RS19340 0.88 -0.2
330,608 + +0.1
330,608 + +0.4
330,608 + +0.3
330,608 + +0.5
330,608 + -0.3
330,609 - +0.1
330,609 - +0.2
330,756 + +1.0
330,756 + +1.0
330,757 - +2.5
330,757 - +1.6
330,757 - +1.5
330,867 + ABZR86_RS19345 0.22 +0.4
330,894 - ABZR86_RS19345 0.25 +1.4
330,912 + ABZR86_RS19345 0.27 +0.6
331,039 + ABZR86_RS19345 0.44 +0.1
331,039 + ABZR86_RS19345 0.44 +0.2
331,039 + ABZR86_RS19345 0.44 +1.0
331,039 + ABZR86_RS19345 0.44 -0.3
331,045 + ABZR86_RS19345 0.45 +1.5
331,046 - ABZR86_RS19345 0.45 +1.4
331,112 + ABZR86_RS19345 0.53 +0.7
331,410 + +1.5
331,410 + +0.7
331,410 + +1.0
331,410 + +1.9
331,410 + +1.5
331,410 + +1.2
331,410 + -0.4
331,410 + +1.2
331,411 - +0.4
331,411 - +1.1
331,411 - -0.1
331,411 - +1.4
331,411 - +0.6
331,457 - +0.0
331,540 + -0.2
331,546 + +0.7
331,547 - -2.0
331,547 - -0.1
331,547 - +0.3
331,589 + ABZR86_RS19350 0.14 -0.8
331,715 - ABZR86_RS19350 0.26 -1.0
331,742 + ABZR86_RS19350 0.29 -0.7
331,743 - ABZR86_RS19350 0.29 +0.4
331,780 + ABZR86_RS19350 0.33 -1.7
331,780 + ABZR86_RS19350 0.33 +0.0
331,805 + ABZR86_RS19350 0.35 -0.1
331,806 - ABZR86_RS19350 0.35 +0.2
331,807 + ABZR86_RS19350 0.36 +0.0
331,807 + ABZR86_RS19350 0.36 +1.2
331,808 - ABZR86_RS19350 0.36 -0.1
331,870 + ABZR86_RS19350 0.42 -0.3
331,870 + ABZR86_RS19350 0.42 +0.7
331,870 + ABZR86_RS19350 0.42 -0.4
331,871 - ABZR86_RS19350 0.42 -0.6
331,934 - ABZR86_RS19350 0.48 +0.8
331,934 - ABZR86_RS19350 0.48 -1.2
331,934 - ABZR86_RS19350 0.48 +0.3
332,063 - ABZR86_RS19350 0.61 +0.1
332,066 - ABZR86_RS19350 0.62 -0.3
332,104 + ABZR86_RS19350 0.66 -0.5
332,104 + ABZR86_RS19350 0.66 -1.0
332,105 - ABZR86_RS19350 0.66 -0.3
332,143 + ABZR86_RS19350 0.69 -1.1
332,182 + ABZR86_RS19350 0.73 +1.0
332,189 - ABZR86_RS19350 0.74 +1.0
332,263 + ABZR86_RS19350 0.82 -0.0
332,264 - ABZR86_RS19350 0.82 -0.1
332,264 - ABZR86_RS19350 0.82 +0.0
332,369 - +0.6
332,369 - +0.9
332,369 - -0.1
332,404 + -0.3
332,405 - +0.5
332,405 - +0.6
332,405 - -0.1
332,455 + -0.1
332,455 + +1.0
332,456 - +0.6

Or see this region's nucleotide sequence