Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08045

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08040 and ABZR86_RS08045 are separated by 35 nucleotidesABZR86_RS08045 and ABZR86_RS08050 are separated by 4 nucleotides ABZR86_RS08040: ABZR86_RS08040 - chorismate synthase, at 1,796,567 to 1,797,655 _RS08040 ABZR86_RS08045: ABZR86_RS08045 - GNAT family N-acetyltransferase, at 1,797,691 to 1,798,260 _RS08045 ABZR86_RS08050: ABZR86_RS08050 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 1,798,265 to 1,799,188 _RS08050 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1796.988 kb on + strand, within ABZR86_RS08040at 1797.313 kb on - strand, within ABZR86_RS08040at 1797.324 kb on + strand, within ABZR86_RS08040at 1797.324 kb on + strand, within ABZR86_RS08040at 1797.324 kb on + strand, within ABZR86_RS08040at 1797.324 kb on + strand, within ABZR86_RS08040at 1797.324 kb on + strand, within ABZR86_RS08040at 1797.330 kb on + strand, within ABZR86_RS08040at 1797.330 kb on + strand, within ABZR86_RS08040at 1797.330 kb on + strand, within ABZR86_RS08040at 1797.331 kb on - strand, within ABZR86_RS08040at 1797.331 kb on - strand, within ABZR86_RS08040at 1797.372 kb on + strand, within ABZR86_RS08040at 1797.372 kb on + strand, within ABZR86_RS08040at 1797.373 kb on - strand, within ABZR86_RS08040at 1797.373 kb on - strand, within ABZR86_RS08040at 1797.373 kb on - strand, within ABZR86_RS08040at 1797.442 kb on - strand, within ABZR86_RS08040at 1797.442 kb on - strand, within ABZR86_RS08040at 1797.490 kb on + strand, within ABZR86_RS08040at 1797.491 kb on - strand, within ABZR86_RS08040at 1797.491 kb on - strand, within ABZR86_RS08040at 1797.491 kb on - strand, within ABZR86_RS08040at 1797.679 kb on - strandat 1797.692 kb on + strandat 1797.692 kb on + strandat 1797.693 kb on - strandat 1797.785 kb on + strand, within ABZR86_RS08045at 1797.785 kb on + strand, within ABZR86_RS08045at 1797.785 kb on + strand, within ABZR86_RS08045at 1797.785 kb on + strand, within ABZR86_RS08045at 1797.786 kb on - strand, within ABZR86_RS08045at 1797.786 kb on - strand, within ABZR86_RS08045at 1797.786 kb on - strand, within ABZR86_RS08045at 1797.849 kb on + strand, within ABZR86_RS08045at 1797.850 kb on - strand, within ABZR86_RS08045at 1798.163 kb on + strand, within ABZR86_RS08045at 1798.164 kb on - strand, within ABZR86_RS08045at 1798.458 kb on + strand, within ABZR86_RS08050at 1798.458 kb on + strand, within ABZR86_RS08050at 1798.542 kb on + strand, within ABZR86_RS08050at 1798.543 kb on - strand, within ABZR86_RS08050at 1798.563 kb on + strand, within ABZR86_RS08050at 1798.581 kb on + strand, within ABZR86_RS08050at 1798.581 kb on + strand, within ABZR86_RS08050at 1798.752 kb on + strand, within ABZR86_RS08050at 1798.753 kb on - strand, within ABZR86_RS08050at 1798.753 kb on - strand, within ABZR86_RS08050at 1798.753 kb on - strand, within ABZR86_RS08050at 1798.753 kb on - strand, within ABZR86_RS08050at 1798.753 kb on - strand, within ABZR86_RS08050at 1798.753 kb on - strand, within ABZR86_RS08050at 1798.938 kb on + strand, within ABZR86_RS08050at 1798.938 kb on + strand, within ABZR86_RS08050at 1798.938 kb on + strand, within ABZR86_RS08050at 1798.939 kb on - strand, within ABZR86_RS08050at 1799.025 kb on + strand, within ABZR86_RS08050at 1799.025 kb on + strand, within ABZR86_RS08050at 1799.026 kb on - strand, within ABZR86_RS08050at 1799.148 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.223 kb on + strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.224 kb on - strandat 1799.226 kb on - strandat 1799.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,796,988 + ABZR86_RS08040 0.39 -3.9
1,797,313 - ABZR86_RS08040 0.69 -2.8
1,797,324 + ABZR86_RS08040 0.70 -2.4
1,797,324 + ABZR86_RS08040 0.70 -3.5
1,797,324 + ABZR86_RS08040 0.70 -3.0
1,797,324 + ABZR86_RS08040 0.70 -1.6
1,797,324 + ABZR86_RS08040 0.70 -3.8
1,797,330 + ABZR86_RS08040 0.70 -1.3
1,797,330 + ABZR86_RS08040 0.70 -3.1
1,797,330 + ABZR86_RS08040 0.70 -3.4
1,797,331 - ABZR86_RS08040 0.70 -3.0
1,797,331 - ABZR86_RS08040 0.70 -2.8
1,797,372 + ABZR86_RS08040 0.74 -4.7
1,797,372 + ABZR86_RS08040 0.74 -1.6
1,797,373 - ABZR86_RS08040 0.74 -3.5
1,797,373 - ABZR86_RS08040 0.74 -2.8
1,797,373 - ABZR86_RS08040 0.74 -2.1
1,797,442 - ABZR86_RS08040 0.80 -3.8
1,797,442 - ABZR86_RS08040 0.80 -3.7
1,797,490 + ABZR86_RS08040 0.85 -0.5
1,797,491 - ABZR86_RS08040 0.85 -3.6
1,797,491 - ABZR86_RS08040 0.85 -3.2
1,797,491 - ABZR86_RS08040 0.85 -2.3
1,797,679 - -1.3
1,797,692 + -0.3
1,797,692 + -0.2
1,797,693 - -0.5
1,797,785 + ABZR86_RS08045 0.16 +0.4
1,797,785 + ABZR86_RS08045 0.16 +0.5
1,797,785 + ABZR86_RS08045 0.16 +0.6
1,797,785 + ABZR86_RS08045 0.16 +0.4
1,797,786 - ABZR86_RS08045 0.17 +0.9
1,797,786 - ABZR86_RS08045 0.17 +1.1
1,797,786 - ABZR86_RS08045 0.17 +1.0
1,797,849 + ABZR86_RS08045 0.28 +0.4
1,797,850 - ABZR86_RS08045 0.28 +0.7
1,798,163 + ABZR86_RS08045 0.83 +0.3
1,798,164 - ABZR86_RS08045 0.83 +1.2
1,798,458 + ABZR86_RS08050 0.21 +0.8
1,798,458 + ABZR86_RS08050 0.21 +0.6
1,798,542 + ABZR86_RS08050 0.30 -0.1
1,798,543 - ABZR86_RS08050 0.30 +0.5
1,798,563 + ABZR86_RS08050 0.32 +0.1
1,798,581 + ABZR86_RS08050 0.34 +0.1
1,798,581 + ABZR86_RS08050 0.34 +0.7
1,798,752 + ABZR86_RS08050 0.53 +1.6
1,798,753 - ABZR86_RS08050 0.53 -0.3
1,798,753 - ABZR86_RS08050 0.53 +0.9
1,798,753 - ABZR86_RS08050 0.53 +0.4
1,798,753 - ABZR86_RS08050 0.53 -0.1
1,798,753 - ABZR86_RS08050 0.53 -0.1
1,798,753 - ABZR86_RS08050 0.53 -0.3
1,798,938 + ABZR86_RS08050 0.73 -1.2
1,798,938 + ABZR86_RS08050 0.73 -1.7
1,798,938 + ABZR86_RS08050 0.73 +0.3
1,798,939 - ABZR86_RS08050 0.73 +0.7
1,799,025 + ABZR86_RS08050 0.82 +0.2
1,799,025 + ABZR86_RS08050 0.82 -0.4
1,799,026 - ABZR86_RS08050 0.82 +1.0
1,799,148 + +1.1
1,799,223 + +0.6
1,799,223 + +0.2
1,799,223 + +1.2
1,799,223 + +0.2
1,799,223 + +0.5
1,799,223 + +0.2
1,799,223 + +1.2
1,799,223 + +0.8
1,799,223 + +0.7
1,799,223 + -0.2
1,799,224 - +0.7
1,799,224 - -0.5
1,799,224 - +0.2
1,799,224 - -0.1
1,799,224 - +0.4
1,799,224 - +0.4
1,799,224 - +0.4
1,799,224 - -0.4
1,799,224 - -0.3
1,799,224 - -1.6
1,799,226 - +0.1
1,799,226 - -0.5

Or see this region's nucleotide sequence