Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05220

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05210 and ABZR86_RS05215 are separated by 175 nucleotidesABZR86_RS05215 and ABZR86_RS05220 are separated by 34 nucleotidesABZR86_RS05220 and ABZR86_RS05225 are separated by 3 nucleotidesABZR86_RS05225 and ABZR86_RS05230 are separated by 50 nucleotidesABZR86_RS05230 and ABZR86_RS05235 are separated by 92 nucleotides ABZR86_RS05210: ABZR86_RS05210 - hypothetical protein, at 1,177,007 to 1,177,495 _RS05210 ABZR86_RS05215: ABZR86_RS05215 - O-acetyl-ADP-ribose deacetylase, at 1,177,671 to 1,178,201 _RS05215 ABZR86_RS05220: ABZR86_RS05220 - hypothetical protein, at 1,178,236 to 1,178,544 _RS05220 ABZR86_RS05225: ABZR86_RS05225 - hypothetical protein, at 1,178,548 to 1,178,754 _RS05225 ABZR86_RS05230: ABZR86_RS05230 - TetR family transcriptional regulator, at 1,178,805 to 1,179,437 _RS05230 ABZR86_RS05235: ABZR86_RS05235 - O-methyltransferase, at 1,179,530 to 1,180,186 _RS05235 Position (kb) 1178 1179Strain fitness (log2 ratio) -2 -1 0 1 2at 1177.320 kb on + strand, within ABZR86_RS05210at 1177.330 kb on + strand, within ABZR86_RS05210at 1177.401 kb on - strand, within ABZR86_RS05210at 1177.459 kb on + strandat 1177.460 kb on - strandat 1177.621 kb on + strandat 1177.622 kb on - strandat 1177.622 kb on - strandat 1177.622 kb on - strandat 1177.622 kb on - strandat 1177.631 kb on + strandat 1177.632 kb on - strandat 1177.633 kb on + strandat 1177.633 kb on + strandat 1177.633 kb on + strandat 1177.633 kb on + strandat 1177.633 kb on + strandat 1177.633 kb on + strandat 1177.634 kb on - strandat 1177.654 kb on - strandat 1177.660 kb on + strandat 1177.661 kb on - strandat 1177.661 kb on - strandat 1177.662 kb on + strandat 1177.662 kb on + strandat 1177.662 kb on + strandat 1177.662 kb on + strandat 1177.663 kb on - strandat 1177.715 kb on - strandat 1177.837 kb on + strand, within ABZR86_RS05215at 1177.838 kb on - strand, within ABZR86_RS05215at 1177.838 kb on - strand, within ABZR86_RS05215at 1177.838 kb on - strand, within ABZR86_RS05215at 1178.212 kb on + strandat 1178.262 kb on - strandat 1178.262 kb on - strandat 1178.267 kb on - strand, within ABZR86_RS05220at 1178.315 kb on - strand, within ABZR86_RS05220at 1178.315 kb on - strand, within ABZR86_RS05220at 1178.369 kb on - strand, within ABZR86_RS05220at 1178.550 kb on - strandat 1178.584 kb on - strand, within ABZR86_RS05225at 1178.790 kb on + strandat 1178.791 kb on - strandat 1178.792 kb on + strandat 1178.792 kb on + strandat 1178.793 kb on - strandat 1178.798 kb on + strandat 1178.799 kb on - strandat 1178.799 kb on - strandat 1178.799 kb on - strandat 1178.830 kb on + strandat 1178.830 kb on + strandat 1178.863 kb on + strandat 1178.863 kb on + strandat 1179.027 kb on + strand, within ABZR86_RS05230at 1179.253 kb on + strand, within ABZR86_RS05230at 1179.253 kb on + strand, within ABZR86_RS05230at 1179.253 kb on + strand, within ABZR86_RS05230at 1179.254 kb on - strand, within ABZR86_RS05230at 1179.254 kb on - strand, within ABZR86_RS05230at 1179.260 kb on - strand, within ABZR86_RS05230at 1179.260 kb on - strand, within ABZR86_RS05230at 1179.503 kb on + strandat 1179.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,177,320 + ABZR86_RS05210 0.64 -0.4
1,177,330 + ABZR86_RS05210 0.66 +0.3
1,177,401 - ABZR86_RS05210 0.81 +0.1
1,177,459 + +1.0
1,177,460 - -1.1
1,177,621 + -0.1
1,177,622 - +0.6
1,177,622 - +0.1
1,177,622 - -0.1
1,177,622 - +0.5
1,177,631 + -0.3
1,177,632 - +0.0
1,177,633 + +1.6
1,177,633 + -2.0
1,177,633 + -0.3
1,177,633 + +1.5
1,177,633 + -0.8
1,177,633 + -0.2
1,177,634 - -0.3
1,177,654 - -0.9
1,177,660 + +1.9
1,177,661 - +0.8
1,177,661 - -0.7
1,177,662 + +0.5
1,177,662 + -0.4
1,177,662 + +0.2
1,177,662 + +0.3
1,177,663 - +0.0
1,177,715 - +0.7
1,177,837 + ABZR86_RS05215 0.31 +0.5
1,177,838 - ABZR86_RS05215 0.31 +0.4
1,177,838 - ABZR86_RS05215 0.31 -0.1
1,177,838 - ABZR86_RS05215 0.31 +0.3
1,178,212 + -0.4
1,178,262 - -0.1
1,178,262 - -0.6
1,178,267 - ABZR86_RS05220 0.10 -0.3
1,178,315 - ABZR86_RS05220 0.26 -0.3
1,178,315 - ABZR86_RS05220 0.26 +0.8
1,178,369 - ABZR86_RS05220 0.43 -0.1
1,178,550 - -0.8
1,178,584 - ABZR86_RS05225 0.17 -0.8
1,178,790 + -0.6
1,178,791 - +0.5
1,178,792 + +0.6
1,178,792 + +0.2
1,178,793 - +0.2
1,178,798 + -0.4
1,178,799 - +0.3
1,178,799 - +0.5
1,178,799 - -0.5
1,178,830 + +1.6
1,178,830 + -0.4
1,178,863 + +1.1
1,178,863 + -0.0
1,179,027 + ABZR86_RS05230 0.35 -0.4
1,179,253 + ABZR86_RS05230 0.71 -0.7
1,179,253 + ABZR86_RS05230 0.71 +0.2
1,179,253 + ABZR86_RS05230 0.71 +0.1
1,179,254 - ABZR86_RS05230 0.71 +0.4
1,179,254 - ABZR86_RS05230 0.71 -1.7
1,179,260 - ABZR86_RS05230 0.72 -0.5
1,179,260 - ABZR86_RS05230 0.72 -0.3
1,179,503 + -0.8
1,179,542 - +0.3

Or see this region's nucleotide sequence