Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03955

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03945 and ABZR86_RS03950 are separated by 89 nucleotidesABZR86_RS03950 and ABZR86_RS03955 are separated by 202 nucleotidesABZR86_RS03955 and ABZR86_RS03960 overlap by 4 nucleotides ABZR86_RS03945: ABZR86_RS03945 - GlxA family transcriptional regulator, at 864,231 to 865,166 _RS03945 ABZR86_RS03950: ABZR86_RS03950 - RidA family protein, at 865,256 to 865,717 _RS03950 ABZR86_RS03955: ABZR86_RS03955 - DEAD/DEAH box helicase, at 865,920 to 868,328 _RS03955 ABZR86_RS03960: ABZR86_RS03960 - ribonuclease H-like domain-containing protein, at 868,325 to 869,149 _RS03960 Position (kb) 865 866 867 868 869Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.369 kb on - strand, within ABZR86_RS03950at 865.557 kb on + strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.706 kb on - strandat 865.706 kb on - strandat 865.746 kb on - strandat 865.842 kb on + strandat 866.016 kb on + strandat 866.016 kb on + strandat 866.067 kb on + strandat 866.067 kb on + strandat 866.067 kb on + strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.071 kb on + strandat 866.071 kb on + strandat 866.071 kb on + strandat 866.072 kb on - strandat 866.139 kb on + strandat 866.139 kb on + strandat 866.139 kb on + strandat 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.281 kb on - strand, within ABZR86_RS03955at 866.511 kb on + strand, within ABZR86_RS03955at 866.511 kb on + strand, within ABZR86_RS03955at 866.511 kb on + strand, within ABZR86_RS03955at 866.512 kb on - strand, within ABZR86_RS03955at 866.512 kb on - strand, within ABZR86_RS03955at 866.512 kb on - strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.538 kb on + strand, within ABZR86_RS03955at 866.539 kb on - strand, within ABZR86_RS03955at 866.605 kb on - strand, within ABZR86_RS03955at 866.889 kb on + strand, within ABZR86_RS03955at 866.889 kb on + strand, within ABZR86_RS03955at 866.889 kb on + strand, within ABZR86_RS03955at 866.889 kb on + strand, within ABZR86_RS03955at 866.889 kb on + strand, within ABZR86_RS03955at 866.890 kb on - strand, within ABZR86_RS03955at 866.890 kb on - strand, within ABZR86_RS03955at 866.902 kb on + strand, within ABZR86_RS03955at 866.903 kb on - strand, within ABZR86_RS03955at 866.903 kb on - strand, within ABZR86_RS03955at 867.189 kb on + strand, within ABZR86_RS03955at 867.189 kb on + strand, within ABZR86_RS03955at 867.190 kb on - strand, within ABZR86_RS03955at 867.420 kb on + strand, within ABZR86_RS03955at 867.519 kb on + strand, within ABZR86_RS03955at 867.543 kb on + strand, within ABZR86_RS03955at 867.544 kb on - strand, within ABZR86_RS03955at 867.579 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.619 kb on - strand, within ABZR86_RS03955at 867.642 kb on + strand, within ABZR86_RS03955at 867.643 kb on - strand, within ABZR86_RS03955at 867.643 kb on - strand, within ABZR86_RS03955at 867.645 kb on + strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.663 kb on + strand, within ABZR86_RS03955at 867.663 kb on + strand, within ABZR86_RS03955at 867.664 kb on - strand, within ABZR86_RS03955at 867.664 kb on - strand, within ABZR86_RS03955at 867.780 kb on + strand, within ABZR86_RS03955at 867.781 kb on - strand, within ABZR86_RS03955at 867.941 kb on + strand, within ABZR86_RS03955at 867.941 kb on + strand, within ABZR86_RS03955at 867.942 kb on - strand, within ABZR86_RS03955at 868.110 kb on + strandat 868.110 kb on + strandat 868.111 kb on - strandat 868.111 kb on - strandat 868.111 kb on - strandat 868.111 kb on - strandat 868.116 kb on + strandat 868.117 kb on - strandat 868.325 kb on - strandat 868.325 kb on - strandat 868.325 kb on - strandat 868.325 kb on - strandat 868.372 kb on + strandat 868.372 kb on + strandat 868.373 kb on - strandat 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.897 kb on + strand, within ABZR86_RS03960at 868.897 kb on + strand, within ABZR86_RS03960at 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.148 kb on - strandat 869.229 kb on + strandat 869.229 kb on + strandat 869.229 kb on + strandat 869.299 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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865,060 + ABZR86_RS03945 0.89 +1.7
865,060 + ABZR86_RS03945 0.89 -0.1
865,060 + ABZR86_RS03945 0.89 -0.9
865,060 + ABZR86_RS03945 0.89 +0.7
865,060 + ABZR86_RS03945 0.89 -0.8
865,060 + ABZR86_RS03945 0.89 +1.2
865,060 + ABZR86_RS03945 0.89 +0.3
865,060 + ABZR86_RS03945 0.89 -0.1
865,060 + ABZR86_RS03945 0.89 +1.1
865,060 + ABZR86_RS03945 0.89 -0.6
865,060 + ABZR86_RS03945 0.89 -0.4
865,061 - ABZR86_RS03945 0.89 +0.2
865,061 - ABZR86_RS03945 0.89 +0.2
865,061 - ABZR86_RS03945 0.89 -0.2
865,061 - ABZR86_RS03945 0.89 -0.2
865,359 + ABZR86_RS03950 0.22 -1.0
865,359 + ABZR86_RS03950 0.22 +0.0
865,359 + ABZR86_RS03950 0.22 -0.1
865,359 + ABZR86_RS03950 0.22 +0.6
865,360 - ABZR86_RS03950 0.23 -1.0
865,360 - ABZR86_RS03950 0.23 -0.8
865,360 - ABZR86_RS03950 0.23 -0.1
865,369 - ABZR86_RS03950 0.24 +0.9
865,557 + ABZR86_RS03950 0.65 +1.8
865,558 - ABZR86_RS03950 0.65 -0.3
865,558 - ABZR86_RS03950 0.65 -0.3
865,558 - ABZR86_RS03950 0.65 -0.4
865,706 - +0.4
865,706 - -0.1
865,746 - +0.2
865,842 + -0.4
866,016 + +0.3
866,016 + -1.3
866,067 + -0.0
866,067 + +0.5
866,067 + +0.6
866,068 - +0.1
866,068 - +0.4
866,068 - -1.3
866,068 - -0.1
866,068 - +0.5
866,071 + +0.6
866,071 + -0.5
866,071 + -0.4
866,072 - +1.3
866,139 + -1.4
866,139 + -1.2
866,139 + +0.0
866,280 + ABZR86_RS03955 0.15 +0.8
866,280 + ABZR86_RS03955 0.15 +0.8
866,280 + ABZR86_RS03955 0.15 +0.5
866,280 + ABZR86_RS03955 0.15 -0.5
866,280 + ABZR86_RS03955 0.15 +0.5
866,281 - ABZR86_RS03955 0.15 +0.2
866,511 + ABZR86_RS03955 0.25 +0.2
866,511 + ABZR86_RS03955 0.25 -3.9
866,511 + ABZR86_RS03955 0.25 +0.0
866,512 - ABZR86_RS03955 0.25 -0.1
866,512 - ABZR86_RS03955 0.25 -1.7
866,512 - ABZR86_RS03955 0.25 -0.4
866,534 + ABZR86_RS03955 0.25 -0.3
866,534 + ABZR86_RS03955 0.25 -0.9
866,534 + ABZR86_RS03955 0.25 +0.2
866,534 + ABZR86_RS03955 0.25 +0.2
866,534 + ABZR86_RS03955 0.25 +0.8
866,534 + ABZR86_RS03955 0.25 -1.7
866,534 + ABZR86_RS03955 0.25 +0.0
866,534 + ABZR86_RS03955 0.25 +0.8
866,534 + ABZR86_RS03955 0.25 +0.0
866,534 + ABZR86_RS03955 0.25 -0.7
866,535 - ABZR86_RS03955 0.26 +0.4
866,535 - ABZR86_RS03955 0.26 +0.6
866,535 - ABZR86_RS03955 0.26 +0.4
866,535 - ABZR86_RS03955 0.26 +0.6
866,535 - ABZR86_RS03955 0.26 -0.4
866,535 - ABZR86_RS03955 0.26 +0.2
866,535 - ABZR86_RS03955 0.26 +0.4
866,535 - ABZR86_RS03955 0.26 -0.6
866,535 - ABZR86_RS03955 0.26 +0.6
866,535 - ABZR86_RS03955 0.26 -0.2
866,538 + ABZR86_RS03955 0.26 -0.1
866,539 - ABZR86_RS03955 0.26 -1.2
866,605 - ABZR86_RS03955 0.28 +0.7
866,889 + ABZR86_RS03955 0.40 +0.1
866,889 + ABZR86_RS03955 0.40 -0.1
866,889 + ABZR86_RS03955 0.40 +0.6
866,889 + ABZR86_RS03955 0.40 -0.1
866,889 + ABZR86_RS03955 0.40 +0.8
866,890 - ABZR86_RS03955 0.40 -1.3
866,890 - ABZR86_RS03955 0.40 -0.4
866,902 + ABZR86_RS03955 0.41 +0.2
866,903 - ABZR86_RS03955 0.41 +0.2
866,903 - ABZR86_RS03955 0.41 -0.6
867,189 + ABZR86_RS03955 0.53 +0.6
867,189 + ABZR86_RS03955 0.53 -0.3
867,190 - ABZR86_RS03955 0.53 +1.1
867,420 + ABZR86_RS03955 0.62 -1.1
867,519 + ABZR86_RS03955 0.66 +0.2
867,543 + ABZR86_RS03955 0.67 -1.4
867,544 - ABZR86_RS03955 0.67 +0.6
867,579 + ABZR86_RS03955 0.69 +0.9
867,618 + ABZR86_RS03955 0.70 -0.7
867,618 + ABZR86_RS03955 0.70 -0.9
867,618 + ABZR86_RS03955 0.70 +0.2
867,618 + ABZR86_RS03955 0.70 +0.2
867,619 - ABZR86_RS03955 0.71 -0.5
867,642 + ABZR86_RS03955 0.71 -1.6
867,643 - ABZR86_RS03955 0.72 -1.4
867,643 - ABZR86_RS03955 0.72 +0.8
867,645 + ABZR86_RS03955 0.72 -0.5
867,646 - ABZR86_RS03955 0.72 +1.7
867,646 - ABZR86_RS03955 0.72 +0.3
867,646 - ABZR86_RS03955 0.72 +0.8
867,646 - ABZR86_RS03955 0.72 +0.1
867,663 + ABZR86_RS03955 0.72 -0.0
867,663 + ABZR86_RS03955 0.72 -0.0
867,664 - ABZR86_RS03955 0.72 +0.1
867,664 - ABZR86_RS03955 0.72 -0.1
867,780 + ABZR86_RS03955 0.77 -0.1
867,781 - ABZR86_RS03955 0.77 +0.4
867,941 + ABZR86_RS03955 0.84 +0.1
867,941 + ABZR86_RS03955 0.84 +1.0
867,942 - ABZR86_RS03955 0.84 -0.5
868,110 + +0.1
868,110 + -0.2
868,111 - -0.6
868,111 - +0.6
868,111 - +0.1
868,111 - -0.3
868,116 + +0.7
868,117 - +0.3
868,325 - +0.0
868,325 - -0.8
868,325 - -0.3
868,325 - -0.0
868,372 + +0.3
868,372 + +0.2
868,373 - -1.2
868,811 + ABZR86_RS03960 0.59 -0.1
868,811 + ABZR86_RS03960 0.59 -0.1
868,811 + ABZR86_RS03960 0.59 -0.6
868,811 + ABZR86_RS03960 0.59 +0.5
868,811 + ABZR86_RS03960 0.59 +0.3
868,812 - ABZR86_RS03960 0.59 +0.2
868,812 - ABZR86_RS03960 0.59 -0.1
868,812 - ABZR86_RS03960 0.59 -1.3
868,826 + ABZR86_RS03960 0.61 -0.1
868,826 + ABZR86_RS03960 0.61 -0.7
868,826 + ABZR86_RS03960 0.61 +0.4
868,827 - ABZR86_RS03960 0.61 +0.3
868,827 - ABZR86_RS03960 0.61 +0.9
868,827 - ABZR86_RS03960 0.61 -0.6
868,827 - ABZR86_RS03960 0.61 +0.8
868,827 - ABZR86_RS03960 0.61 +0.5
868,897 + ABZR86_RS03960 0.69 +1.0
868,897 + ABZR86_RS03960 0.69 +0.7
869,147 + -0.4
869,147 + -0.0
869,147 + -0.2
869,147 + +1.0
869,147 + -0.1
869,148 - +0.2
869,229 + -0.8
869,229 + -0.1
869,229 + -0.5
869,299 + +0.3

Or see this region's nucleotide sequence