Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000223 and ABIE53_000224 overlap by 14 nucleotides ABIE53_000224 and ABIE53_000225 are separated by 147 nucleotides
ABIE53_000223: ABIE53_000223 - hypothetical protein, at 227,565 to 227,804
_000223
ABIE53_000224: ABIE53_000224 - hypothetical protein, at 227,791 to 228,126
_000224
ABIE53_000225: ABIE53_000225 - hypothetical protein, at 228,274 to 228,849
_000225
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 226.796 kb on + strand at 226.797 kb on - strand at 226.806 kb on + strand at 226.807 kb on - strand at 226.807 kb on - strand at 226.807 kb on - strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.836 kb on - strand at 226.836 kb on - strand at 226.838 kb on + strand at 226.838 kb on + strand at 226.839 kb on - strand at 226.839 kb on - strand at 226.878 kb on + strand at 226.879 kb on - strand at 226.879 kb on - strand at 226.929 kb on + strand at 226.930 kb on - strand at 226.930 kb on - strand at 226.965 kb on + strand at 227.046 kb on + strand at 227.047 kb on - strand at 227.047 kb on - strand at 227.107 kb on + strand at 227.108 kb on - strand at 227.108 kb on - strand at 227.114 kb on + strand at 227.114 kb on + strand at 227.114 kb on + strand at 227.115 kb on - strand at 227.115 kb on - strand at 227.115 kb on - strand at 227.156 kb on - strand at 227.156 kb on - strand at 227.156 kb on - strand at 227.166 kb on - strand at 227.166 kb on - strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.170 kb on - strand at 227.170 kb on - strand at 227.170 kb on - strand at 227.170 kb on - strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.333 kb on + strand at 227.333 kb on + strand at 227.334 kb on - strand at 227.334 kb on - strand at 227.371 kb on + strand at 227.371 kb on + strand at 227.372 kb on - strand at 227.372 kb on - strand at 227.416 kb on + strand at 227.417 kb on - strand at 227.417 kb on - strand at 227.460 kb on + strand at 227.460 kb on + strand at 227.461 kb on - strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.469 kb on - strand at 227.469 kb on - strand at 227.514 kb on + strand at 227.515 kb on - strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.560 kb on - strand at 227.560 kb on - strand at 227.658 kb on - strand, within ABIE53_000223 at 227.658 kb on - strand, within ABIE53_000223 at 227.674 kb on + strand, within ABIE53_000223 at 227.709 kb on - strand, within ABIE53_000223 at 227.745 kb on + strand, within ABIE53_000223 at 227.745 kb on + strand, within ABIE53_000223 at 227.746 kb on - strand, within ABIE53_000223 at 227.746 kb on - strand, within ABIE53_000223 at 227.746 kb on - strand, within ABIE53_000223 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.885 kb on + strand, within ABIE53_000224 at 227.885 kb on + strand, within ABIE53_000224 at 227.886 kb on - strand, within ABIE53_000224 at 227.886 kb on - strand, within ABIE53_000224 at 227.927 kb on + strand, within ABIE53_000224 at 227.927 kb on + strand, within ABIE53_000224 at 227.928 kb on - strand, within ABIE53_000224 at 227.970 kb on - strand, within ABIE53_000224 at 227.970 kb on - strand, within ABIE53_000224 at 227.970 kb on - strand, within ABIE53_000224 at 228.005 kb on + strand, within ABIE53_000224 at 228.005 kb on + strand, within ABIE53_000224 at 228.005 kb on + strand, within ABIE53_000224 at 228.006 kb on - strand, within ABIE53_000224 at 228.006 kb on - strand, within ABIE53_000224 at 228.006 kb on - strand, within ABIE53_000224 at 228.018 kb on + strand, within ABIE53_000224 at 228.101 kb on - strand at 228.152 kb on + strand at 228.152 kb on + strand at 228.164 kb on + strand at 228.164 kb on + strand at 228.170 kb on + strand at 228.170 kb on + strand at 228.171 kb on - strand at 228.275 kb on + strand at 228.276 kb on - strand at 228.277 kb on + strand at 228.277 kb on + strand at 228.295 kb on - strand at 228.295 kb on - strand at 228.675 kb on + strand, within ABIE53_000225 at 228.675 kb on + strand, within ABIE53_000225 at 228.676 kb on - strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.755 kb on + strand, within ABIE53_000225 at 228.755 kb on + strand, within ABIE53_000225 at 228.756 kb on - strand, within ABIE53_000225 at 228.756 kb on - strand, within ABIE53_000225 at 228.867 kb on - strand at 228.919 kb on + strand at 228.920 kb on - strand at 228.920 kb on - strand at 228.949 kb on - strand at 228.949 kb on - strand at 228.949 kb on - strand at 229.028 kb on + strand at 229.028 kb on + strand at 229.028 kb on + strand at 229.028 kb on + strand at 229.029 kb on - strand at 229.029 kb on - strand at 229.122 kb on + strand at 229.122 kb on + strand at 229.123 kb on - strand at 229.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 226,796 + -0.7 226,797 - -0.0 226,806 + +0.8 226,807 - +0.3 226,807 - -1.1 226,807 - -1.1 226,835 + +0.1 226,835 + +0.1 226,835 + +0.8 226,835 + -0.7 226,835 + -0.6 226,836 - +0.9 226,836 - +0.8 226,838 + +0.7 226,838 + +0.8 226,839 - +0.7 226,839 - +0.2 226,878 + +0.6 226,879 - -0.6 226,879 - +0.8 226,929 + +0.3 226,930 - +2.4 226,930 - -0.2 226,965 + +0.9 227,046 + -0.8 227,047 - -0.7 227,047 - -0.8 227,107 + -1.8 227,108 - -0.2 227,108 - -0.4 227,114 + -0.6 227,114 + -0.4 227,114 + -1.2 227,115 - -0.0 227,115 - -0.2 227,115 - -0.2 227,156 - +0.5 227,156 - -0.5 227,156 - +0.8 227,166 - +1.0 227,166 - -0.0 227,169 + -0.7 227,169 + -0.8 227,169 + -0.1 227,169 + +0.3 227,169 + -0.3 227,170 - +0.5 227,170 - -0.0 227,170 - -0.2 227,170 - -1.1 227,285 + -0.4 227,285 + -0.6 227,285 + -0.9 227,285 + -0.8 227,285 + +0.2 227,285 + -0.2 227,285 + +0.5 227,285 + +3.6 227,285 + +0.2 227,286 - +0.7 227,286 - -1.0 227,286 - -0.0 227,286 - +1.0 227,286 - +0.3 227,286 - +0.4 227,286 - +0.6 227,286 - -1.0 227,286 - +0.8 227,286 - -1.0 227,333 + +1.4 227,333 + +0.2 227,334 - -0.7 227,334 - -1.1 227,371 + -1.4 227,371 + +0.2 227,372 - -1.3 227,372 - +1.0 227,416 + -0.2 227,417 - -0.2 227,417 - -0.5 227,460 + -1.1 227,460 + -0.0 227,461 - -0.0 227,468 + -0.2 227,468 + +0.1 227,468 + -0.8 227,468 + -0.7 227,468 + -1.0 227,469 - -1.6 227,469 - -0.2 227,514 + -1.0 227,515 - -0.4 227,559 + -0.1 227,559 + +0.7 227,559 + -0.4 227,559 + +1.4 227,560 - -0.1 227,560 - +0.1 227,658 - ABIE53_000223 0.39 +0.7 227,658 - ABIE53_000223 0.39 -0.4 227,674 + ABIE53_000223 0.45 +0.1 227,709 - ABIE53_000223 0.60 -0.2 227,745 + ABIE53_000223 0.75 -0.9 227,745 + ABIE53_000223 0.75 -0.2 227,746 - ABIE53_000223 0.75 -0.6 227,746 - ABIE53_000223 0.75 +1.5 227,746 - ABIE53_000223 0.75 -0.3 227,843 + ABIE53_000224 0.15 +0.2 227,843 + ABIE53_000224 0.15 +0.1 227,843 + ABIE53_000224 0.15 -1.1 227,843 + ABIE53_000224 0.15 +0.1 227,843 + ABIE53_000224 0.15 +0.7 227,843 + ABIE53_000224 0.15 +1.0 227,843 + ABIE53_000224 0.15 -1.0 227,843 + ABIE53_000224 0.15 -0.9 227,843 + ABIE53_000224 0.15 -0.5 227,844 - ABIE53_000224 0.16 -0.3 227,844 - ABIE53_000224 0.16 -0.1 227,844 - ABIE53_000224 0.16 +0.1 227,844 - ABIE53_000224 0.16 +2.6 227,844 - ABIE53_000224 0.16 -0.2 227,881 + ABIE53_000224 0.27 -1.2 227,881 + ABIE53_000224 0.27 -0.3 227,881 + ABIE53_000224 0.27 +0.7 227,881 + ABIE53_000224 0.27 +0.5 227,881 + ABIE53_000224 0.27 +1.6 227,882 - ABIE53_000224 0.27 -2.3 227,882 - ABIE53_000224 0.27 -0.5 227,882 - ABIE53_000224 0.27 +1.7 227,882 - ABIE53_000224 0.27 +0.8 227,882 - ABIE53_000224 0.27 +4.6 227,882 - ABIE53_000224 0.27 -0.5 227,882 - ABIE53_000224 0.27 -0.7 227,885 + ABIE53_000224 0.28 -0.0 227,885 + ABIE53_000224 0.28 +0.8 227,886 - ABIE53_000224 0.28 +0.8 227,886 - ABIE53_000224 0.28 -0.6 227,927 + ABIE53_000224 0.40 +0.7 227,927 + ABIE53_000224 0.40 -0.2 227,928 - ABIE53_000224 0.41 -0.0 227,970 - ABIE53_000224 0.53 -0.7 227,970 - ABIE53_000224 0.53 -0.1 227,970 - ABIE53_000224 0.53 +1.0 228,005 + ABIE53_000224 0.64 -2.2 228,005 + ABIE53_000224 0.64 +0.4 228,005 + ABIE53_000224 0.64 -0.2 228,006 - ABIE53_000224 0.64 -1.3 228,006 - ABIE53_000224 0.64 +0.1 228,006 - ABIE53_000224 0.64 -0.3 228,018 + ABIE53_000224 0.68 -0.9 228,101 - -1.6 228,152 + -1.1 228,152 + -0.3 228,164 + +1.5 228,164 + +0.2 228,170 + -0.2 228,170 + +1.8 228,171 - +1.4 228,275 + -0.3 228,276 - +1.4 228,277 + -0.3 228,277 + +1.8 228,295 - -0.7 228,295 - +0.7 228,675 + ABIE53_000225 0.70 -0.7 228,675 + ABIE53_000225 0.70 -0.3 228,676 - ABIE53_000225 0.70 -0.6 228,690 + ABIE53_000225 0.72 -1.1 228,690 + ABIE53_000225 0.72 +0.9 228,690 + ABIE53_000225 0.72 -0.1 228,690 + ABIE53_000225 0.72 -0.4 228,690 + ABIE53_000225 0.72 +0.0 228,690 + ABIE53_000225 0.72 +0.7 228,690 + ABIE53_000225 0.72 -1.1 228,690 + ABIE53_000225 0.72 +0.6 228,690 + ABIE53_000225 0.72 -0.3 228,691 - ABIE53_000225 0.72 -0.3 228,691 - ABIE53_000225 0.72 -1.3 228,691 - ABIE53_000225 0.72 +0.1 228,691 - ABIE53_000225 0.72 -0.8 228,691 - ABIE53_000225 0.72 +0.2 228,755 + ABIE53_000225 0.84 -0.2 228,755 + ABIE53_000225 0.84 +0.2 228,756 - ABIE53_000225 0.84 +2.0 228,756 - ABIE53_000225 0.84 +0.1 228,867 - -0.6 228,919 + +1.2 228,920 - -1.8 228,920 - +0.3 228,949 - +1.0 228,949 - +0.6 228,949 - +1.1 229,028 + -0.0 229,028 + -0.7 229,028 + +1.2 229,028 + -0.0 229,029 - -0.2 229,029 - -0.3 229,122 + -0.5 229,122 + -0.1 229,123 - -0.4 229,123 - +1.0
Or see this region's nucleotide sequence