Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3205

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3203 and DvMF_3204 are separated by 241 nucleotidesDvMF_3204 and ruvB overlap by 1 nucleotidesruvB and thyX are separated by 222 nucleotides DvMF_3203: DvMF_3203 - diguanylate cyclase (RefSeq), at 4,035,220 to 4,036,929 _3203 DvMF_3204: DvMF_3204 - Holliday junction DNA helicase RuvA (RefSeq), at 4,037,171 to 4,037,779 _3204 DvMF_3205: ruvB - Holliday junction DNA helicase RuvB (RefSeq), at 4,037,779 to 4,038,783 ruvB DvMF_3206: thyX - FAD-dependent thymidylate synthase (RefSeq), at 4,039,006 to 4,039,737 thyX Position (kb) 4037 4038 4039Strain fitness (log2 ratio) -2 -1 0 1at 4036.809 kb on - strandat 4036.834 kb on - strandat 4036.860 kb on + strandat 4037.002 kb on + strandat 4037.047 kb on - strandat 4037.083 kb on + strandat 4037.098 kb on + strandat 4037.343 kb on + strand, within DvMF_3204at 4037.351 kb on - strand, within DvMF_3204at 4037.385 kb on + strand, within DvMF_3204at 4037.388 kb on + strand, within DvMF_3204at 4037.401 kb on - strand, within DvMF_3204at 4037.729 kb on - strandat 4037.790 kb on + strandat 4037.811 kb on + strandat 4037.872 kb on - strandat 4038.272 kb on + strand, within ruvBat 4038.638 kb on - strand, within ruvB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
remove
4,036,809 - -0.5
4,036,834 - -0.2
4,036,860 + +1.7
4,037,002 + +0.1
4,037,047 - -0.3
4,037,083 + -0.4
4,037,098 + -0.1
4,037,343 + DvMF_3204 0.28 -0.7
4,037,351 - DvMF_3204 0.30 -2.2
4,037,385 + DvMF_3204 0.35 -0.8
4,037,388 + DvMF_3204 0.36 -1.4
4,037,401 - DvMF_3204 0.38 -1.5
4,037,729 - +0.1
4,037,790 + -1.2
4,037,811 + -1.3
4,037,872 - +0.5
4,038,272 + ruvB DvMF_3205 0.49 -1.3
4,038,638 - ruvB DvMF_3205 0.85 +0.4

Or see this region's nucleotide sequence