Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3204

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3203 and DvMF_3204 are separated by 241 nucleotidesDvMF_3204 and ruvB overlap by 1 nucleotides DvMF_3203: DvMF_3203 - diguanylate cyclase (RefSeq), at 4,035,220 to 4,036,929 _3203 DvMF_3204: DvMF_3204 - Holliday junction DNA helicase RuvA (RefSeq), at 4,037,171 to 4,037,779 _3204 DvMF_3205: ruvB - Holliday junction DNA helicase RuvB (RefSeq), at 4,037,779 to 4,038,783 ruvB Position (kb) 4037 4038Strain fitness (log2 ratio) -2 -1 0 1at 4036.232 kb on - strand, within DvMF_3203at 4036.318 kb on - strand, within DvMF_3203at 4036.351 kb on + strand, within DvMF_3203at 4036.531 kb on + strand, within DvMF_3203at 4036.728 kb on + strand, within DvMF_3203at 4036.809 kb on - strandat 4036.834 kb on - strandat 4036.860 kb on + strandat 4037.002 kb on + strandat 4037.047 kb on - strandat 4037.083 kb on + strandat 4037.098 kb on + strandat 4037.343 kb on + strand, within DvMF_3204at 4037.351 kb on - strand, within DvMF_3204at 4037.385 kb on + strand, within DvMF_3204at 4037.388 kb on + strand, within DvMF_3204at 4037.401 kb on - strand, within DvMF_3204at 4037.729 kb on - strandat 4037.790 kb on + strandat 4037.811 kb on + strandat 4037.872 kb on - strandat 4038.272 kb on + strand, within ruvBat 4038.638 kb on - strand, within ruvB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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4,036,232 - DvMF_3203 0.59 -1.0
4,036,318 - DvMF_3203 0.64 -0.0
4,036,351 + DvMF_3203 0.66 -0.6
4,036,531 + DvMF_3203 0.77 -0.2
4,036,728 + DvMF_3203 0.88 -0.1
4,036,809 - -0.5
4,036,834 - -0.2
4,036,860 + +1.7
4,037,002 + +0.1
4,037,047 - -0.3
4,037,083 + -0.4
4,037,098 + -0.1
4,037,343 + DvMF_3204 0.28 -0.7
4,037,351 - DvMF_3204 0.30 -2.2
4,037,385 + DvMF_3204 0.35 -0.8
4,037,388 + DvMF_3204 0.36 -1.4
4,037,401 - DvMF_3204 0.38 -1.5
4,037,729 - +0.1
4,037,790 + -1.2
4,037,811 + -1.3
4,037,872 - +0.5
4,038,272 + ruvB DvMF_3205 0.49 -1.3
4,038,638 - ruvB DvMF_3205 0.85 +0.4

Or see this region's nucleotide sequence