Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3184

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3182 and DvMF_3183 are separated by 277 nucleotidesDvMF_3183 and DvMF_3184 are separated by 302 nucleotidesDvMF_3184 and DvMF_3185 are separated by 93 nucleotides DvMF_3182: DvMF_3182 - hypothetical protein (RefSeq), at 4,014,527 to 4,015,042 _3182 DvMF_3183: DvMF_3183 - transcriptional regulator, TraR/DksA family (RefSeq), at 4,015,320 to 4,015,544 _3183 DvMF_3184: DvMF_3184 - Cupin 2 conserved barrel domain protein (RefSeq), at 4,015,847 to 4,016,251 _3184 DvMF_3185: DvMF_3185 - phosphate transporter (RefSeq), at 4,016,345 to 4,017,355 _3185 Position (kb) 4015 4016 4017Strain fitness (log2 ratio) -2 -1 0 1at 4014.865 kb on + strand, within DvMF_3182at 4014.865 kb on + strand, within DvMF_3182at 4014.905 kb on - strand, within DvMF_3182at 4014.975 kb on - strand, within DvMF_3182at 4015.243 kb on - strandat 4015.379 kb on - strand, within DvMF_3183at 4015.421 kb on - strand, within DvMF_3183at 4015.505 kb on + strand, within DvMF_3183at 4015.561 kb on + strandat 4015.977 kb on + strand, within DvMF_3184at 4016.052 kb on + strand, within DvMF_3184at 4016.312 kb on - strandat 4016.328 kb on + strandat 4016.490 kb on - strand, within DvMF_3185at 4016.687 kb on - strand, within DvMF_3185at 4016.687 kb on - strand, within DvMF_3185at 4016.984 kb on + strand, within DvMF_3185at 4016.993 kb on + strand, within DvMF_3185at 4017.041 kb on + strand, within DvMF_3185at 4017.092 kb on - strand, within DvMF_3185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
remove
4,014,865 + DvMF_3182 0.66 -0.3
4,014,865 + DvMF_3182 0.66 -0.3
4,014,905 - DvMF_3182 0.73 +0.0
4,014,975 - DvMF_3182 0.87 +0.4
4,015,243 - -0.3
4,015,379 - DvMF_3183 0.26 -1.1
4,015,421 - DvMF_3183 0.45 -1.0
4,015,505 + DvMF_3183 0.82 -0.3
4,015,561 + -0.9
4,015,977 + DvMF_3184 0.32 -0.7
4,016,052 + DvMF_3184 0.51 -1.6
4,016,312 - -0.1
4,016,328 + -0.7
4,016,490 - DvMF_3185 0.14 -0.5
4,016,687 - DvMF_3185 0.34 -2.2
4,016,687 - DvMF_3185 0.34 -0.7
4,016,984 + DvMF_3185 0.63 -1.2
4,016,993 + DvMF_3185 0.64 +0.5
4,017,041 + DvMF_3185 0.69 -0.9
4,017,092 - DvMF_3185 0.74 -1.2

Or see this region's nucleotide sequence