Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3159

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3158 and DvMF_3159 are separated by 221 nucleotidesDvMF_3159 and DvMF_3160 are separated by 339 nucleotidesDvMF_3160 and DvMF_3161 are separated by 4 nucleotides DvMF_3158: DvMF_3158 - carboxyl-terminal protease (RefSeq), at 3,982,747 to 3,984,048 _3158 DvMF_3159: DvMF_3159 - protein of unknown function DUF610 YibQ (RefSeq), at 3,984,270 to 3,985,901 _3159 DvMF_3160: DvMF_3160 - Nucleoside-diphosphate kinase (RefSeq), at 3,986,241 to 3,986,660 _3160 DvMF_3161: DvMF_3161 - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data), at 3,986,665 to 3,987,474 _3161 Position (kb) 3984 3985 3986Strain fitness (log2 ratio) -1 0 1at 3984.197 kb on + strandat 3984.375 kb on - strandat 3984.542 kb on + strand, within DvMF_3159at 3984.894 kb on + strand, within DvMF_3159at 3985.464 kb on - strand, within DvMF_3159at 3985.492 kb on - strand, within DvMF_3159at 3985.831 kb on + strandat 3985.969 kb on + strandat 3985.971 kb on + strandat 3986.149 kb on + strandat 3986.170 kb on - strandat 3986.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,984,197 + +0.2
3,984,375 - -0.5
3,984,542 + DvMF_3159 0.17 -1.0
3,984,894 + DvMF_3159 0.38 -0.8
3,985,464 - DvMF_3159 0.73 -1.3
3,985,492 - DvMF_3159 0.75 -1.3
3,985,831 + -1.3
3,985,969 + -1.0
3,985,971 + -0.9
3,986,149 + +1.2
3,986,170 - -0.5
3,986,175 - -0.6

Or see this region's nucleotide sequence