Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3154

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3152 and DvMF_3153 are separated by 67 nucleotidesDvMF_3153 and DvMF_3154 are separated by 116 nucleotidesDvMF_3154 and DvMF_3155 are separated by 4 nucleotides DvMF_3152: DvMF_3152 - extracellular solute-binding protein family 3 (RefSeq), at 3,977,022 to 3,977,837 _3152 DvMF_3153: DvMF_3153 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,977,905 to 3,978,606 _3153 DvMF_3154: DvMF_3154 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,978,723 to 3,979,412 _3154 DvMF_3155: DvMF_3155 - ribosomal L11 methyltransferase (RefSeq), at 3,979,417 to 3,980,277 _3155 Position (kb) 3978 3979 3980Strain fitness (log2 ratio) -2 -1 0 1at 3977.842 kb on + strandat 3978.157 kb on + strand, within DvMF_3153at 3978.178 kb on - strand, within DvMF_3153at 3978.232 kb on + strand, within DvMF_3153at 3978.297 kb on + strand, within DvMF_3153at 3978.438 kb on - strand, within DvMF_3153at 3978.490 kb on + strand, within DvMF_3153at 3978.568 kb on - strandat 3978.669 kb on + strandat 3978.821 kb on - strand, within DvMF_3154at 3978.861 kb on - strand, within DvMF_3154at 3978.991 kb on + strand, within DvMF_3154at 3979.028 kb on - strand, within DvMF_3154at 3979.458 kb on - strandat 3979.489 kb on + strandat 3979.497 kb on - strandat 3979.612 kb on + strand, within DvMF_3155at 3979.822 kb on - strand, within DvMF_3155at 3979.828 kb on - strand, within DvMF_3155at 3980.388 kb on + strandat 3980.388 kb on + strandat 3980.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,977,842 + +0.4
3,978,157 + DvMF_3153 0.36 -0.4
3,978,178 - DvMF_3153 0.39 -0.1
3,978,232 + DvMF_3153 0.47 -0.0
3,978,297 + DvMF_3153 0.56 +0.1
3,978,438 - DvMF_3153 0.76 -0.2
3,978,490 + DvMF_3153 0.83 -0.5
3,978,568 - -0.0
3,978,669 + -0.1
3,978,821 - DvMF_3154 0.14 -0.3
3,978,861 - DvMF_3154 0.20 +0.0
3,978,991 + DvMF_3154 0.39 +0.1
3,979,028 - DvMF_3154 0.44 +0.4
3,979,458 - +0.1
3,979,489 + -1.1
3,979,497 - -0.3
3,979,612 + DvMF_3155 0.23 -1.0
3,979,822 - DvMF_3155 0.47 -1.1
3,979,828 - DvMF_3155 0.48 -2.1
3,980,388 + -0.7
3,980,388 + -0.4
3,980,396 - -0.5

Or see this region's nucleotide sequence