Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3152 and DvMF_3153 are separated by 67 nucleotides DvMF_3153 and DvMF_3154 are separated by 116 nucleotides DvMF_3154 and DvMF_3155 are separated by 4 nucleotides
DvMF_3152: DvMF_3152 - extracellular solute-binding protein family 3 (RefSeq), at 3,977,022 to 3,977,837
_3152
DvMF_3153: DvMF_3153 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,977,905 to 3,978,606
_3153
DvMF_3154: DvMF_3154 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,978,723 to 3,979,412
_3154
DvMF_3155: DvMF_3155 - ribosomal L11 methyltransferase (RefSeq), at 3,979,417 to 3,980,277
_3155
Position (kb)
3978
3979
3980 Strain fitness (log2 ratio)
-2
-1
0
1 at 3977.842 kb on + strand at 3978.157 kb on + strand, within DvMF_3153 at 3978.178 kb on - strand, within DvMF_3153 at 3978.232 kb on + strand, within DvMF_3153 at 3978.297 kb on + strand, within DvMF_3153 at 3978.438 kb on - strand, within DvMF_3153 at 3978.490 kb on + strand, within DvMF_3153 at 3978.568 kb on - strand at 3978.669 kb on + strand at 3978.821 kb on - strand, within DvMF_3154 at 3978.861 kb on - strand, within DvMF_3154 at 3978.991 kb on + strand, within DvMF_3154 at 3979.028 kb on - strand, within DvMF_3154 at 3979.458 kb on - strand at 3979.489 kb on + strand at 3979.497 kb on - strand at 3979.612 kb on + strand, within DvMF_3155 at 3979.822 kb on - strand, within DvMF_3155 at 3979.828 kb on - strand, within DvMF_3155 at 3980.388 kb on + strand at 3980.388 kb on + strand at 3980.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,977,842 + +0.4 3,978,157 + DvMF_3153 0.36 -0.4 3,978,178 - DvMF_3153 0.39 -0.1 3,978,232 + DvMF_3153 0.47 -0.0 3,978,297 + DvMF_3153 0.56 +0.1 3,978,438 - DvMF_3153 0.76 -0.2 3,978,490 + DvMF_3153 0.83 -0.5 3,978,568 - -0.0 3,978,669 + -0.1 3,978,821 - DvMF_3154 0.14 -0.3 3,978,861 - DvMF_3154 0.20 +0.0 3,978,991 + DvMF_3154 0.39 +0.1 3,979,028 - DvMF_3154 0.44 +0.4 3,979,458 - +0.1 3,979,489 + -1.1 3,979,497 - -0.3 3,979,612 + DvMF_3155 0.23 -1.0 3,979,822 - DvMF_3155 0.47 -1.1 3,979,828 - DvMF_3155 0.48 -2.1 3,980,388 + -0.7 3,980,388 + -0.4 3,980,396 - -0.5
Or see this region's nucleotide sequence