Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3016 and DvMF_3017 are separated by 103 nucleotides DvMF_3017 and DvMF_3018 overlap by 4 nucleotides
DvMF_3016: DvMF_3016 - glycosyl transferase group 1 (RefSeq), at 3,805,340 to 3,806,461
_3016
DvMF_3017: DvMF_3017 - glycosyl transferase group 1 (RefSeq), at 3,806,565 to 3,807,647
_3017
DvMF_3018: DvMF_3018 - O-antigen polymerase (RefSeq), at 3,807,644 to 3,808,984
_3018
Position (kb)
3806
3807
3808 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3805.694 kb on - strand, within DvMF_3016 at 3805.737 kb on - strand, within DvMF_3016 at 3805.804 kb on - strand, within DvMF_3016 at 3805.857 kb on - strand, within DvMF_3016 at 3805.870 kb on + strand, within DvMF_3016 at 3805.892 kb on + strand, within DvMF_3016 at 3805.942 kb on - strand, within DvMF_3016 at 3806.139 kb on - strand, within DvMF_3016 at 3806.258 kb on - strand, within DvMF_3016 at 3806.304 kb on + strand, within DvMF_3016 at 3806.312 kb on - strand, within DvMF_3016 at 3806.312 kb on - strand, within DvMF_3016 at 3806.335 kb on + strand, within DvMF_3016 at 3806.343 kb on - strand, within DvMF_3016 at 3806.603 kb on + strand at 3806.665 kb on + strand at 3806.797 kb on + strand, within DvMF_3017 at 3806.797 kb on - strand, within DvMF_3017 at 3806.845 kb on + strand, within DvMF_3017 at 3806.869 kb on + strand, within DvMF_3017 at 3806.877 kb on - strand, within DvMF_3017 at 3806.877 kb on - strand, within DvMF_3017 at 3806.987 kb on + strand, within DvMF_3017 at 3807.196 kb on + strand, within DvMF_3017 at 3807.216 kb on + strand, within DvMF_3017 at 3807.533 kb on - strand, within DvMF_3017 at 3807.689 kb on + strand at 3807.819 kb on + strand, within DvMF_3018 at 3807.989 kb on - strand, within DvMF_3018 at 3808.018 kb on + strand, within DvMF_3018 at 3808.077 kb on + strand, within DvMF_3018 at 3808.551 kb on + strand, within DvMF_3018 at 3808.612 kb on + strand, within DvMF_3018 at 3808.615 kb on - strand, within DvMF_3018
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,805,694 - DvMF_3016 0.32 -1.9 3,805,737 - DvMF_3016 0.35 -2.5 3,805,804 - DvMF_3016 0.41 -2.5 3,805,857 - DvMF_3016 0.46 -2.3 3,805,870 + DvMF_3016 0.47 -2.6 3,805,892 + DvMF_3016 0.49 -3.2 3,805,942 - DvMF_3016 0.54 -3.1 3,806,139 - DvMF_3016 0.71 -4.6 3,806,258 - DvMF_3016 0.82 -4.7 3,806,304 + DvMF_3016 0.86 -2.4 3,806,312 - DvMF_3016 0.87 -3.4 3,806,312 - DvMF_3016 0.87 -2.9 3,806,335 + DvMF_3016 0.89 -3.2 3,806,343 - DvMF_3016 0.89 -1.6 3,806,603 + -1.5 3,806,665 + -4.3 3,806,797 + DvMF_3017 0.21 -2.6 3,806,797 - DvMF_3017 0.21 -1.9 3,806,845 + DvMF_3017 0.26 -2.8 3,806,869 + DvMF_3017 0.28 -3.0 3,806,877 - DvMF_3017 0.29 -3.3 3,806,877 - DvMF_3017 0.29 -2.3 3,806,987 + DvMF_3017 0.39 -2.2 3,807,196 + DvMF_3017 0.58 -3.2 3,807,216 + DvMF_3017 0.60 -2.6 3,807,533 - DvMF_3017 0.89 -3.2 3,807,689 + -0.5 3,807,819 + DvMF_3018 0.13 -1.8 3,807,989 - DvMF_3018 0.26 -3.6 3,808,018 + DvMF_3018 0.28 -3.5 3,808,077 + DvMF_3018 0.32 -0.2 3,808,551 + DvMF_3018 0.68 -2.3 3,808,612 + DvMF_3018 0.72 -1.8 3,808,615 - DvMF_3018 0.72 -2.8
Or see this region's nucleotide sequence