Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3016

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3015 and DvMF_3016 overlap by 8 nucleotidesDvMF_3016 and DvMF_3017 are separated by 103 nucleotides DvMF_3015: DvMF_3015 - aminotransferase class I and II (RefSeq), at 3,804,076 to 3,805,347 _3015 DvMF_3016: DvMF_3016 - glycosyl transferase group 1 (RefSeq), at 3,805,340 to 3,806,461 _3016 DvMF_3017: DvMF_3017 - glycosyl transferase group 1 (RefSeq), at 3,806,565 to 3,807,647 _3017 Position (kb) 3805 3806 3807Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3804.362 kb on + strand, within DvMF_3015at 3804.688 kb on + strand, within DvMF_3015at 3804.779 kb on - strand, within DvMF_3015at 3804.892 kb on - strand, within DvMF_3015at 3804.914 kb on + strand, within DvMF_3015at 3805.256 kb on + strandat 3805.490 kb on - strand, within DvMF_3016at 3805.694 kb on - strand, within DvMF_3016at 3805.737 kb on - strand, within DvMF_3016at 3805.804 kb on - strand, within DvMF_3016at 3805.857 kb on - strand, within DvMF_3016at 3805.870 kb on + strand, within DvMF_3016at 3805.892 kb on + strand, within DvMF_3016at 3805.942 kb on - strand, within DvMF_3016at 3806.139 kb on - strand, within DvMF_3016at 3806.258 kb on - strand, within DvMF_3016at 3806.304 kb on + strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.335 kb on + strand, within DvMF_3016at 3806.343 kb on - strand, within DvMF_3016at 3806.603 kb on + strandat 3806.665 kb on + strandat 3806.797 kb on + strand, within DvMF_3017at 3806.797 kb on - strand, within DvMF_3017at 3806.845 kb on + strand, within DvMF_3017at 3806.869 kb on + strand, within DvMF_3017at 3806.877 kb on - strand, within DvMF_3017at 3806.877 kb on - strand, within DvMF_3017at 3806.987 kb on + strand, within DvMF_3017at 3807.196 kb on + strand, within DvMF_3017at 3807.216 kb on + strand, within DvMF_3017

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,804,362 + DvMF_3015 0.22 -0.5
3,804,688 + DvMF_3015 0.48 +0.1
3,804,779 - DvMF_3015 0.55 -0.7
3,804,892 - DvMF_3015 0.64 -0.2
3,804,914 + DvMF_3015 0.66 +1.0
3,805,256 + -1.0
3,805,490 - DvMF_3016 0.13 -1.7
3,805,694 - DvMF_3016 0.32 -1.9
3,805,737 - DvMF_3016 0.35 -2.5
3,805,804 - DvMF_3016 0.41 -2.5
3,805,857 - DvMF_3016 0.46 -2.3
3,805,870 + DvMF_3016 0.47 -2.6
3,805,892 + DvMF_3016 0.49 -3.2
3,805,942 - DvMF_3016 0.54 -3.1
3,806,139 - DvMF_3016 0.71 -4.6
3,806,258 - DvMF_3016 0.82 -4.7
3,806,304 + DvMF_3016 0.86 -2.4
3,806,312 - DvMF_3016 0.87 -3.4
3,806,312 - DvMF_3016 0.87 -2.9
3,806,335 + DvMF_3016 0.89 -3.2
3,806,343 - DvMF_3016 0.89 -1.6
3,806,603 + -1.5
3,806,665 + -4.3
3,806,797 + DvMF_3017 0.21 -2.6
3,806,797 - DvMF_3017 0.21 -1.9
3,806,845 + DvMF_3017 0.26 -2.8
3,806,869 + DvMF_3017 0.28 -3.0
3,806,877 - DvMF_3017 0.29 -3.3
3,806,877 - DvMF_3017 0.29 -2.3
3,806,987 + DvMF_3017 0.39 -2.2
3,807,196 + DvMF_3017 0.58 -3.2
3,807,216 + DvMF_3017 0.60 -2.6

Or see this region's nucleotide sequence